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Substitution Matrices creation for Smith Waterman (Read 2823 times)
Sep 30th, 2015 at 2:00pm

Sunil Boddu   Offline
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Hello,

Need some help with Substitution Matrix creation. I have to create our own matrices for testing. Is there any way to do it from Ugene or else any automated tools available to generate matrices ? I've to use them in Smith-Waterman

Thanks
 
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Reply #1 - Oct 1st, 2015 at 7:28pm

Olga Golosova   Offline
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Hello, Sunil!

No, it is not possible. In the current UGENE version you can only use the common matrices (PAM, BLOSUM, VTML and others).
 
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