UGENE Forum - Substitution Matrices creation for Smith Waterman

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Substitution Matrices creation for Smith Waterman (Read 2805 times)

Sep 30^th, 2015 at 2:00pm

Sunil Boddu Offline
YaBB Newbies

Posts: 1

Hello,

Need some help with Substitution Matrix creation. I have to create our own matrices for testing. Is there any way to do it from Ugene or else any automated tools available to generate matrices ? I've to use them in Smith-Waterman

Thanks

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Reply #1 - Oct 1^st, 2015 at 7:28pm

Olga Golosova Offline
YaBB Administrator

Posts: 338

Hello, Sunil!

No, it is not possible. In the current UGENE version you can only use the common matrices (PAM, BLOSUM, VTML and others).

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