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Automated protein secondary structure prediction (Read 6288 times)

Mar 8^th, 2015 at 8:26pm

Anton Gurkov Offline
YaBB Newbies

Posts: 2

Dear all,

I would like to apply PSIPRED algorithm for secondary structure prediction to several hundreds of protien sequences in Ugene. However, I cannot apply it to several opened sequences at once. Also, I cannot find this algorithm in the Workflow Designer.

So, is it, in principle, possible to automate the process?

Thank you.
Anton

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Reply #1 - Mar 10^th, 2015 at 5:28pm

German Offline
Full Member

Posts: 118

Hello, Anton. Unfortunately, UGENE Workflow Designer does not provide the elements for the secondary structure prediction. We have planned this feature. We will inform you when it is finished. Thank you for the request.

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Reply #2 - Mar 11^th, 2015 at 5:32pm

Anton Gurkov Offline
YaBB Newbies

Posts: 2

Hello, German. Thank you for answer! Hope you will be able to add this feature soon.

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Reply #3 - Mar 25^th, 2015 at 4:27pm

Olga Golosova Offline
YaBB Administrator

Posts: 338

Hello, Anton!
Sorry for the inconvenience!
We will try to fix the issue in one of the nearest release, however 1.16.2 is already planned.
Note that if this is a very urgent task, we can do it ASAP in terms of commercial support.

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