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https://forum.ugene.net/forum/YaBB.pl General Category >> Help and How-to >> Automated protein secondary structure prediction https://forum.ugene.net/forum/YaBB.pl?num=1425821185 Message started by Anton Gurkov on Mar 8^th, 2015 at 8:26pm

Title: Automated protein secondary structure prediction
Post by Anton Gurkov on Mar 8^th, 2015 at 8:26pm

Dear all,

I would like to apply PSIPRED algorithm for secondary structure prediction to several hundreds of protien sequences in Ugene. However, I cannot apply it to several opened sequences at once. Also, I cannot find this algorithm in the Workflow Designer.

So, is it, in principle, possible to automate the process?

Thank you.
Anton

Title: Re: Automated protein secondary structure prediction
Post by German Grekhov on Mar 10^th, 2015 at 5:28pm

Hello, Anton. Unfortunately, UGENE Workflow Designer does not provide the elements for the secondary structure prediction. We have planned this feature. We will inform you when it is finished. Thank you for the request.

Title: Re: Automated protein secondary structure prediction
Post by Anton Gurkov on Mar 11^th, 2015 at 5:32pm

Hello, German. Thank you for answer! Hope you will be able to add this feature soon.

Title: Re: Automated protein secondary structure prediction
Post by Olga Golosova on Mar 25^th, 2015 at 4:27pm

Hello, Anton!
Sorry for the inconvenience!
We will try to fix the issue in one of the nearest release, however 1.16.2 is already planned.
Note that if this is a very urgent task, we can do it ASAP in terms of commercial support.