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Automated protein secondary structure prediction (Read 6320 times)
Mar 8th, 2015 at 8:26pm

Anton Gurkov   Offline
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Dear all,

I would like to apply PSIPRED algorithm for secondary structure prediction to several hundreds of protien sequences in Ugene. However, I cannot apply it to several opened sequences at once. Also, I cannot find this algorithm in the Workflow Designer.

So, is it, in principle, possible to automate the process?

Thank you.
Anton
 
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Reply #1 - Mar 10th, 2015 at 5:28pm

German   Offline
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Hello, Anton. Unfortunately, UGENE Workflow Designer does not provide the elements for the secondary structure prediction. We have planned this feature. We will inform you when it is finished. Thank you for the request.
 
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Reply #2 - Mar 11th, 2015 at 5:32pm

Anton Gurkov   Offline
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Hello, German. Thank you for answer! Hope you will be able to add this feature soon.
 
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Reply #3 - Mar 25th, 2015 at 4:27pm

Olga Golosova   Offline
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Hello, Anton!
Sorry for the inconvenience!
We will try to fix the issue in one of the nearest release, however 1.16.2 is already planned.
Note that if this is a very urgent task, we can do it ASAP in terms of commercial support.
 
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