UGENE Forum - How to use 64bit bowtie 1.0 binaries?

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How to use 64bit bowtie 1.0 binaries? (Read 6004 times)

May 7^th, 2013 at 12:54pm

vixen sjlin Offline
YaBB Newbies

Posts: 8

Well, last month Bowtie finally released a 64 bit MS windows binaries on their website. I am using 64bit UGene 1.11.5 and I found its bowtie is 0.12.7 32bit! (that's right! 64 bit Ugene got 32bit bowtie binaries)

So how do I switch it to bowtie 1.0 64bit binaries? Are you planning to put it in the next release of Ugene? Thanks!

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Reply #1 - May 7^th, 2013 at 1:51pm

Yuriy Vaskin Offline
Global Moderator

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Posts: 138

Thanks for the question.

Yes, we're going to update Bowtie in UGENE 1.12

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Reply #2 - May 7^th, 2013 at 3:58pm

Olga Golosova Offline
YaBB Administrator

Posts: 338

You may update the Bowtie binary for the current UGENE version in the UGENE Application Settings, see http://ugene.unipro.ru/documentation/manual/basic_functions/app_settings.html#ex...

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Reply #3 - May 8^th, 2013 at 12:26am

vixen sjlin Offline
YaBB Newbies

Posts: 8

Thanks and I will try to change application settings.

Just a reminder to Yuriy. Bowtie 1.0 comes with NO 32 bit binaries for MS windows. So you may need to use 32 bit binaries in Bowtie 0.12.9 for 32 bit of Ugene.

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