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Minimap2 integration for Nanopore and Pacbio read alignment (Read 90 times)
Mar 17th, 2021 at 10:14pm

Fadeev   Offline
YaBB Newbies

Posts: 1
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Hello!

Is it possible to add Minimap2 read aligner to list of tools avaliable for read mapping in Tools -> NGS data analysis -> Read alignment on reference sequence...

Sincerely,
Artem Fadeev
 
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Reply #1 - Mar 24th, 2021 at 10:58am

Dmitrii Sukhomlinov   Offline
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Russia

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Posts: 47
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Hello,

Unfortunately, Minimap2 isn't supported in UGENE and there are no plans for its implementation. But, you may implement it by yourself as an element of Workflow Designer (you may find the detailed instructions about it in this video https://youtu.be/tjV-Hv6BF9s)
 

Best regards,
Dmitrii Sukhomlinov,
UGENE team.
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