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https://forum.ugene.net/forum/YaBB.pl General Category >> Feature Requests >> Minimap2 integration for Nanopore and Pacbio read alignment https://forum.ugene.net/forum/YaBB.pl?num=1615994087 Message started by Fadeev on Mar 17^th, 2021 at 10:14pm

Title: Minimap2 integration for Nanopore and Pacbio read alignment
Post by Fadeev on Mar 17^th, 2021 at 10:14pm

Hello!

Is it possible to add Minimap2 read aligner to list of tools avaliable for read mapping in Tools -> NGS data analysis -> Read alignment on reference sequence...

Sincerely,
Artem Fadeev

Title: Re: Minimap2 integration for Nanopore and Pacbio read alignment
Post by Dmitrii Sukhomlinov on Mar 24^th, 2021 at 10:58am

Hello,

Unfortunately, Minimap2 isn't supported in UGENE and there are no plans for its implementation. But, you may implement it by yourself as an element of Workflow Designer (you may find the detailed instructions about it in this video https://youtu.be/tjV-Hv6BF9s)