UGENE Forum - Compilation fails on Smith-Waterman plugin

Aug 7^th, 2022 at 10:40pm

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UGENE Forum › General Category › Bugs and Issues › Compilation fails on Smith-Waterman plugin

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Compilation fails on Smith-Waterman plugin (Read 13857 times)

Reply #15 - Jul 10^th, 2018 at 12:49am

Igor Chebykin Offline
YaBB Newbies
Novosibirsk

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Posts: 5

Hi Louis!

It's great!
Of course, we need to to update readme.
Anyway, I will try gcc6/7 before, as I use gcc7

Maybe some files was not recompiled after you have played with options? But after full clearing (re-installation) all is ok.
Or, maybe qmake has some bug inside...

Thanks,
--Igor

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Reply #16 - Jul 12^th, 2018 at 11:02am

Olga Golosova Offline
YaBB Administrator

Posts: 338

Hi Louis,

I also have a general question to you: do you any recommendations in case we would like to add more CUDA-optimized tools into UGENE?

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Reply #17 - Aug 28^th, 2018 at 8:33pm

Priscilla Hamer Offline
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Posts: 2

That is pleasant to peruse Smiley bless your heart.

I assume that when everything will be tried and fine, you will propose another source document to download on the site ?

Check out my review of phenq 2020

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Reply #18 - Apr 3^rd, 2019 at 3:49pm

ashleyausten Offline
YaBB Newbies

Posts: 1

I'm writing to instruct you that in spite of all that we're tackling the issue. We fixed the accumulation issues, anyway we have a couple of issues with testing the issue on a Linux machine. In a perfect world, we'll comprehend them in the nearest future.

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Reply #19 - Jul 25^th, 2019 at 6:21pm

JACQUES Offline
YaBB Newbies

Posts: 1

Decent, need to accomplish something like this with mine.

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Reply #20 - Aug 15^th, 2019 at 10:01pm

TamW Offline
YaBB Newbies

Posts: 1

I am glad we were able to find a solution, I was having the problem initially as well but as is well now. Thank you!

Tammy | tile floor installation

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Reply #21 - Nov 14^th, 2020 at 12:17am

LeonardBrian Offline
YaBB Newbies

Posts: 1

Quote:

Hi again!

I'm writing to inform you that we're still working on the issue. We fixed the compilation issues, but we have some problems with testing the issue on a Linux machine. Hopefully, we'll solve them in the nearest future.

Sorry again for the delay!

Failed to load latest commit information. ... An SIMD Smith-Waterman C/C++/Python/Java/R Library for Use in Genomic Applications ... The API files are ready to be compiled together with your own C/C++ files. ... gap open (the total penalty when one gap is opened): -3, gap extension: -1 are recommended,

GNC legal Steroids

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