Welcome, Guest. Please Login or Register
UGENE Bulletin Board
  Welcome to our forum.
  HomeHelpSearchLoginRegister  
 
 
Page Index Toggle Pages: 1
Search dialogue (Read 5232 times)
Jan 6th, 2014 at 7:20pm

pon   Offline
YaBB Newbies

Posts: 4
*
 
First of all, thank you for your great work. UGENE is overall a very useful tool which I have already recommended to my colleagues.

I think I found a bug concerning the search dialogue using the InsDel algorithm.
Open any DNA file and open the search dialogue and use InsDel. When you search for a pattern with 6 letters like "ATTAAA" and click on the reduce button for the neccessary match the value jumps to 32% instead of 96%. When you search for 7 letters like "ATTAAAG" after clicking the button the percentage lowers to 30% and can't be changed anymore at all with the buttons.

I'm using Windows 7 and the 64 bit version of UGene 1.13.0

Thanks for your support!
 
IP Logged
 
Reply #1 - Jan 8th, 2014 at 10:53pm

Yuriy Vaskin   Offline
Global Moderator

Gender: male
Posts: 138
*****
 
Hello!

Thank you for the report. We will fix it in the next version (https://ugene.unipro.ru/tracker/browse/UGENE-2627)
 
IP Logged
 
Reply #2 - Feb 12th, 2014 at 2:33pm

pon   Offline
YaBB Newbies

Posts: 4
*
 
Hi,

I think there is a new major bug in UGENE 1.13.1 concerning the search function.

Create a new document from text:
TTTTTTTTTTTTTTTTTTTTTTTAAATTTTTTTTTTTTTTTTTTTTTTT

Now search for
TTTTTTTTTTTTTTTTTTTTTTTAATTTTTTTTTTTTTTTTTTTTTTT

using the Indel or Substitute option with match percentage of 30%. No result is obtained in this version, at least on my PC, whereas version 1.13.0 finds the results as expected.
 
IP Logged
 
Reply #3 - Feb 14th, 2014 at 11:28pm

Yuriy Vaskin   Offline
Global Moderator

Gender: male
Posts: 138
*****
 
Dear UGENE user,

Thank you for your contribution to our project. We will fix this bug as soon as it possible (https://ugene.unipro.ru/tracker/browse/UGENE-2770)
 
IP Logged
 
Page Index Toggle Pages: 1