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  UGENE Forum › General Category › Help and How-to › Setting external tools
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Setting external tools (Read 4143 times)
Sep 7th, 2016 at 2:16pm

elginong   Offline
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I am trying to do Raw DNA-Seq data processing with my fastq file but it says here that BWA, SAMtools and cutadapt are not set. How do I set them? Please check screenshot.
 
Screenshot__44_.png (133 KB | 379 )
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Reply #1 - Sep 12th, 2016 at 3:46pm

Olga Golosova   Offline
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All these tools are available by default in the UGENE FULL package.

To run the workflow you also need Java Runtime Environment (JRE) to be installed on the computer.
 
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