Hi,

I understand that there's no feature to export the coverage at each position of the reference. Is there some workaround I can do to get this information? Export as SAM and load into some other (free) program? Or export images and analyse them??

Cheers,

Adam

Hello, Adam!
In what format would you like to export the coverage?
Do you need something like specified on the biostars page mentioned by Ilya?

pos A C G T
1 A:2 C:3 G:0 T:1
2 A:2 C:3 G:0 T:1
3 A:0 C:0 G:0 T:7
4 ..
..

May I ask how would you like to use such file? It may help to understand how such feature should be added into UGENE and how popular it is.