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align sequences in workflow designer (Read 4989 times)

May 29^th, 2013 at 6:47pm

randolf Offline
YaBB Newbies

Posts: 27

Hi, I'm working with the workflow designer. I have two sequences and want to combine them in a alignment element, to align them afterwards with muscle.
How can I combine the sequences in an alignment file (.aln)? In the gui I used the "export sequences as alignment".

Thanks for the help,
Thomas

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Reply #1 - May 30^th, 2013 at 12:31pm

Yuriy Vaskin Offline
Global Moderator

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Posts: 138

Hi Thomas!

There is the "Join Sequences into Alignment" element that can do that. It takes all input sequences an outputs one multiple alignment (unaligned yet), then you can pass this "alignment" to the MUSCLE element and write it into a file.

I have attached the scheme.

alignment_thomas.uwl (5 KB | )

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Reply #2 - May 30^th, 2013 at 5:20pm

randolf Offline
YaBB Newbies

Posts: 27

Thank you, it works!

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