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Translate to amino acid with stop codons instead of asterisk (Read 7956 times)
Sep 27th, 2012 at 12:54am

AK   Offline
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Posts: 14
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Hello All,

I have asked the same question in e-mail but am asking again in forum so that it is recorded for future.

Que:
I have to convert a set of DNA sequences (gene models) to
amino acid sequence. I can do so by opening the file and exporting to
FASTA with 'Translate to amino acid alphabet' option selected. But the
problem is that resulting sequence have an asterisk(*) sign for stop
codon as there are three possible stop codons I cannot simply replace
them with anyone. Is there a way I can translate to amino acid without
the *, instead the actual stop codon?

Thanks

Atul
 
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