UGENE Forum - BLAST/+ parameters and output format

May 2^nd, 2024 at 9:14am

Choose Language:

	Welcome, Guest. Please Login or Register
	Welcome to our forum.

Home

Help

UGENE Forum › General Category › Bugs and Issues › BLAST/+ parameters and output format

‹ Previous Topic | Next Topic ›

Pages: 1

BLAST/+ parameters and output format (Read 4833 times)

May 12^th, 2011 at 5:08pm

Poh Offline
YaBB Newbies

Posts: 46

Hi!

I manage to construct and run BLAST+ in workflow designer.

However I found that the output currently produces genbank, CSV and GFF3.

I notice also that the parameter of BLAST/+ is limited to a selected few. Question is how can I add to expose more parameters?

I need especially the output format in m8 or m0 as I have ready parsers for it to filter the alignments based on a defined criteria.

Thanks.

BLAST_parameters.PNG (101 KB | )

IP Logged

Reply #1 - May 17^th, 2011 at 7:30pm

Mikhail Fursov Offline
YaBB Administrator

Gender:
Posts: 162

Hi!
> I notice also that the parameter of BLAST/+ is limited to a selected few. Question is how can I add to expose more parameters?

To be added in the next UGENE release (June/July). Please check the issue (https://ugene.unipro.ru/tracker/browse/UGENE-311) and use dev-snapshot to test as soon as the issue is resolved.

The same with m0-m8 format: https://ugene.unipro.ru/tracker/browse/UGENE-312

---
UGENE team

IP Logged

Reply #2 - May 18^th, 2011 at 2:04pm

Poh Offline
YaBB Newbies

Posts: 46

Great! Thanks.

Poh

IP Logged

Pages: 1

‹ Previous Topic | Next Topic ›

« Home

‹ Board

Top of this page