UGENE Forum - dotplots - 2 of it 1 dysfunctional?

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dotplots - 2 of it 1 dysfunctional? (Read 7986 times)

Apr 19^th, 2011 at 5:11pm

Poh Offline
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Posts: 46

ok I got dot plot working at tool.

But the actions>analyze>Build dotplot .... only take 1 sequence and self align? What is it for? Is it dysfunctional?

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Reply #1 - Apr 19^th, 2011 at 7:03pm

Mikhail Fursov Offline
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Could you provide a screenshot with only 1 sequence shown as option?
I checked the dot-plot build dialog with with v1.9.2 and can select 2 sequences.

Please ensure that you did not checked 'compare with itself' option

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UGENE team

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Reply #2 - Apr 20^th, 2011 at 9:45am

Poh Offline
YaBB Newbies

Posts: 46

It was not that one. The one from Tools>dot plot - works

Attach is the other one which seems to only compare to itself....

Fromactions.JPG (198 KB | )

Fromactions2.JPG (212 KB | )

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Reply #3 - Apr 20^th, 2011 at 9:49am

Poh Offline
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Posts: 46

This one works, from Tools.

So is the one from actions dysfunctional?

fromtools.JPG (204 KB | )

fromtools2.JPG (212 KB | )

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Reply #4 - Apr 20^th, 2011 at 12:56pm

Mikhail Fursov Offline
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Posts: 162

Nope it is functional

It asks you select from the sequences you have opened in the active view. If you add more sequences to the view - more alternative will be available.

I'm going to create new issue with the following improvement: allow to select from sequences/files that are not added to the view and add them automatically.

Track the issue: https://ugene.unipro.ru/tracker/browse/UGENE-211 to get the progress

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UGENE team

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Reply #5 - Apr 20^th, 2011 at 4:30pm

Poh Offline
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Posts: 46

ok..

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