UGENE Forum - How I can run CDD Database?

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How I can run CDD Database? (Read 5891 times)

Mar 12^th, 2011 at 4:21am

Pluszzz Offline
YaBB Newbies

Posts: 8

Do I need some plugin to run CDD Database?
When I click "Search through a remote database", and select cdd, and the database (CDD etc.), the task theoretically starts, but there is only 0% progress, and after a while task ends, without even an error.

Mayby I need some plugin, becouse BLAST didn't want to run as well, but now I have "installed" external tools package and blastn and blastp run well?

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Reply #1 - Mar 12^th, 2011 at 4:20pm

Agu Offline
Junior Member
(Argentinian)

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Posts: 63

No, is trying to connect to this database:
http://www.ncbi.nlm.nih.gov/Structure/cdd/cdd.shtml

Then is a connectivity problem, you are not having access to internet from UGENE. Check if the firewall is blocking UGENE.

As a simple test, go to Help/Check for Updates. If nothing happens, see the log (bottom left). If I do that without connection I get this:

[10:10][ERROR] Task {Check for updates} finished with error: Connection error: Host ugene.unipro.ru not found

Otherwise you should get a messagebox showing your current version and the latest available.

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Reply #2 - Mar 12^th, 2011 at 10:58pm