Welcome, Guest. Please Login or Register
UGENE Bulletin Board
  Welcome to our forum.
  HomeHelpSearchLoginRegister  
 
 
Page Index Toggle Pages: 1
How can I insert a fie with some sequences to alignament? (Read 4943 times)
Nov 25th, 2009 at 2:37am

Bruno Fantinatti   Offline
YaBB Newbies
Brazil

Gender: male
Posts: 4
*
 
Hi,
I need to make a alignament of some sequences. But I don't know to insert the sequences to Ugene to work them. First I need to create a special file type and after insert it?
I had try with a normal fasta file wich have many sequences included, but no results... I think I'm doing some thing wrong...
 
IP Logged
 
Reply #1 - Nov 25th, 2009 at 2:04pm

Ivan Efremov   Offline
YaBB Administrator
Novosibirsk

Gender: male
Posts: 46
*****
 
Hi Bruno,
your question is a quite common issue, we will try to make alignment of multiple FASTA sequences more convenient in future versions.
For now, you have to do the following:

1) Open your FASTA file and export all needed sequences into alignment file - CLUSTAL (see export_to_ma.png).

2) Open exported .aln file and align it using MUSCLE (see align_exported.png)

 

UGENE team
IP Logged
 
Page Index Toggle Pages: 1