UGENE Forum - How can I insert a fie with some sequences to alignament?


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How can I insert a fie with some sequences to alignament? (Read 5275 times)

Nov 25^th, 2009 at 2:37am

Bruno Fantinatti Offline
YaBB Newbies
Brazil

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Posts: 4

Hi,
I need to make a alignament of some sequences. But I don't know to insert the sequences to Ugene to work them. First I need to create a special file type and after insert it?
I had try with a normal fasta file wich have many sequences included, but no results... I think I'm doing some thing wrong...

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Reply #1 - Nov 25^th, 2009 at 2:04pm

Ivan Efremov Offline
YaBB Administrator
Novosibirsk

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Posts: 46

Hi Bruno,
your question is a quite common issue, we will try to make alignment of multiple FASTA sequences more convenient in future versions.
For now, you have to do the following:

1) Open your FASTA file and export all needed sequences into alignment file - CLUSTAL (see export_to_ma.png).

2) Open exported .aln file and align it using MUSCLE (see align_exported.png)

export_to_ma_001.png (27 KB | )

align_exported_001.png (25 KB | )

UGENE team

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