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Searching Annotations (Read 4756 times)
Feb 24th, 2012 at 11:16pm

hezichia   Offline
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Posts: 1
How can I search the annotations of a genbank file?

For example, if I open up the whole genome, how can I easily find the location of gene kdpF.

Thanks in advance.
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Reply #1 - Feb 27th, 2012 at 12:49pm

Yuriy Vaskin   Offline
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Posts: 138
Thanks for asking!

Currently, the only way to search annotations is to use our annotation editor(http://ugene.unipro.ru/documentation/manual/sequence_view/annotations_editor.htm...) which is under the sequence view.

If you click on an annotation in the annotation editor the sequence view will immediately select and show you the location of the annotation.

Genbank annotations are stored into groups. So, you need to find corresponding to you gene group in the annotation tree (It should be titled as "gene", other names are also possible). Then, by expanding items in the group, find an annotation which has your gene's name as its qualifier and click on it.

I've created an issue (https://ugene.unipro.ru/tracker/browse/UGENE-853) of automation of the process. It will be fixed in the next versions of UGENE.
« Last Edit: Feb 28th, 2012 at 5:58pm by Yuriy Vaskin »  

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