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UGENE Forum › General Category › Help and How-to › Running phmmer on a remote machine

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Running phmmer on a remote machine (Read 3241 times)

Jun 15^th, 2011 at 8:54pm

MattPlanet Offline
YaBB Newbies

Posts: 1

Hi Ugene!

As the title, could you tell me if it is/will be possible to run a phmmer task on a remote machine, as I don't have the resources to run it locally?

Also, a potential bug does not allow me to run any HMMER tasks remotely, as I'm missing the [Remote run...] button. Any advice?

I'm running Universal v1.9.3 on a BioLinux system.

Ugene_phmmer.PNG (59 KB | )

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Reply #1 - Jun 17^th, 2011 at 1:00pm

Konstantin Okonechnikov Offline
Global Moderator

Posts: 173

Hi Matt,
remote launch of HMMER3 search is not yet supported.

I've created a corresponding issue in the bug tracker:
https://ugene.unipro.ru/tracker/browse/UGENE-418
After this issue is resolved, it will be possible to run HMMER3 remotely from Workflow Designer.

Meanwhile you can try using a bit out-dated HMMER2. I've attached the workflow schema.

Please note that currently the default public UGENE remote service has rather limited hardware capabilities. There is another free public cluster available till September. Add this address to the list of your remote machines:
https://ugene.unipro.ru/fcp/remote/rservice/engine
User registration is here:
https://ugene.unipro.ru/fcp/remote/user

searchHMM.uwl (3 KB | )

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