[DETAILS][13:41] UGENE initialization started [TRACE][13:41] UGENE run at dir C:/Program Files (x86)/Unipro UGENE with parameters C:\Program Files (x86)\Unipro UGENE\ugeneui.exe [TRACE][13:41] Active UGENE.ini file : C:/Users/Stéphane/AppData/Roaming/Unipro/UGENE.ini [TRACE][13:41] Log view update time 0 millis [TRACE][13:41] Found plugin candidate in default dir: C:/Program Files (x86)/Unipro UGENE/plugins/annotator.plugin [TRACE][13:41] Found plugin candidate in default dir: C:/Program Files (x86)/Unipro UGENE/plugins/assembly_browser.plugin [TRACE][13:41] Found plugin candidate in default dir: C:/Program Files (x86)/Unipro UGENE/plugins/ball.plugin [TRACE][13:41] Found plugin candidate in default dir: C:/Program Files (x86)/Unipro UGENE/plugins/biostruct3d_view.plugin [TRACE][13:41] Found plugin candidate in default dir: C:/Program Files (x86)/Unipro UGENE/plugins/bowtie.plugin [TRACE][13:41] Found plugin candidate in default dir: C:/Program Files (x86)/Unipro UGENE/plugins/chroma_view.plugin [TRACE][13:41] Found plugin candidate in default dir: C:/Program Files (x86)/Unipro UGENE/plugins/circular_view.plugin [TRACE][13:41] Found plugin candidate in default dir: C:/Program Files (x86)/Unipro UGENE/plugins/dbi_bam.plugin [TRACE][13:41] Found plugin candidate in default dir: C:/Program Files (x86)/Unipro UGENE/plugins/dbi_file.plugin [TRACE][13:41] Found plugin candidate in default dir: C:/Program Files (x86)/Unipro UGENE/plugins/dbi_sqlite.plugin [TRACE][13:41] Found plugin candidate in default dir: C:/Program Files (x86)/Unipro UGENE/plugins/dna_export.plugin [TRACE][13:41] Found plugin candidate in default dir: C:/Program Files (x86)/Unipro UGENE/plugins/dna_flexibility.plugin [TRACE][13:41] Found plugin candidate in default dir: C:/Program Files (x86)/Unipro UGENE/plugins/dna_graphpack.plugin [TRACE][13:41] Found plugin candidate in default dir: C:/Program Files (x86)/Unipro UGENE/plugins/dna_stat.plugin [TRACE][13:41] Found plugin candidate in default dir: C:/Program Files (x86)/Unipro UGENE/plugins/dotplot.plugin [TRACE][13:41] Found plugin candidate in default dir: C:/Program Files (x86)/Unipro UGENE/plugins/enzymes.plugin [TRACE][13:41] Found plugin candidate in default dir: C:/Program Files (x86)/Unipro UGENE/plugins/expert_discovery.plugin [TRACE][13:41] Found plugin candidate in default dir: C:/Program Files (x86)/Unipro UGENE/plugins/external_tool_support.plugin [TRACE][13:41] Found plugin candidate in default dir: C:/Program Files (x86)/Unipro UGENE/plugins/genome_aligner.plugin [TRACE][13:41] Found plugin candidate in default dir: C:/Program Files (x86)/Unipro UGENE/plugins/gor4.plugin [TRACE][13:41] Found plugin candidate in default dir: C:/Program Files (x86)/Unipro UGENE/plugins/hmm2.plugin [TRACE][13:41] Found plugin candidate in default dir: C:/Program Files (x86)/Unipro UGENE/plugins/hmm3.plugin [TRACE][13:41] Found plugin candidate in default dir: C:/Program Files (x86)/Unipro UGENE/plugins/kalign.plugin [TRACE][13:41] Found plugin candidate in default dir: C:/Program Files (x86)/Unipro UGENE/plugins/opencl_support.plugin [TRACE][13:41] Found plugin candidate in default dir: C:/Program Files (x86)/Unipro UGENE/plugins/orf_marker.plugin [TRACE][13:41] Found plugin candidate in default dir: C:/Program Files (x86)/Unipro UGENE/plugins/phylip.plugin [TRACE][13:41] Found plugin candidate in default dir: C:/Program Files (x86)/Unipro UGENE/plugins/primer3.plugin [TRACE][13:41] Found plugin candidate in default dir: C:/Program Files (x86)/Unipro UGENE/plugins/psipred.plugin [TRACE][13:41] Found plugin candidate in default dir: C:/Program Files (x86)/Unipro UGENE/plugins/ptools.plugin [TRACE][13:41] Found plugin candidate in default dir: C:/Program Files (x86)/Unipro UGENE/plugins/query_designer.plugin [TRACE][13:41] Found plugin candidate in default dir: C:/Program Files (x86)/Unipro UGENE/plugins/remote_blast.plugin [TRACE][13:41] Found plugin candidate in default dir: C:/Program Files (x86)/Unipro UGENE/plugins/remote_service.plugin [TRACE][13:41] Found plugin candidate in default dir: C:/Program Files (x86)/Unipro UGENE/plugins/repeat_finder.plugin [TRACE][13:41] Found plugin candidate in default dir: C:/Program Files (x86)/Unipro UGENE/plugins/sitecon.plugin [TRACE][13:41] Found plugin candidate in default dir: C:/Program Files (x86)/Unipro UGENE/plugins/smith_waterman.plugin [TRACE][13:41] Found plugin candidate in default dir: C:/Program Files (x86)/Unipro UGENE/plugins/umuscle.plugin [TRACE][13:41] Found plugin candidate in default dir: C:/Program Files (x86)/Unipro UGENE/plugins/weight_matrix.plugin [TRACE][13:41] Found plugin candidate in default dir: C:/Program Files (x86)/Unipro UGENE/plugins/workflow_designer.plugin [TRACE][13:41] List of the plugins to be loaded: [TRACE][13:41] C:/Program Files (x86)/Unipro UGENE/plugins/genome_aligner.plugin [TRACE][13:41] C:/Program Files (x86)/Unipro UGENE/plugins/assembly_browser.plugin [TRACE][13:41] C:/Program Files (x86)/Unipro UGENE/plugins/dotplot.plugin [TRACE][13:41] C:/Program Files (x86)/Unipro UGENE/plugins/gor4.plugin [TRACE][13:41] C:/Program Files (x86)/Unipro UGENE/plugins/dbi_file.plugin [TRACE][13:41] C:/Program Files (x86)/Unipro UGENE/plugins/hmm2.plugin [TRACE][13:41] C:/Program Files (x86)/Unipro UGENE/plugins/weight_matrix.plugin [TRACE][13:41] C:/Program Files (x86)/Unipro UGENE/plugins/orf_marker.plugin [TRACE][13:41] C:/Program Files (x86)/Unipro UGENE/plugins/ptools.plugin [TRACE][13:41] C:/Program Files (x86)/Unipro UGENE/plugins/ball.plugin [TRACE][13:41] C:/Program Files (x86)/Unipro UGENE/plugins/query_designer.plugin [TRACE][13:41] C:/Program Files (x86)/Unipro UGENE/plugins/biostruct3d_view.plugin [TRACE][13:41] C:/Program Files (x86)/Unipro UGENE/plugins/workflow_designer.plugin [TRACE][13:41] C:/Program Files (x86)/Unipro UGENE/plugins/sitecon.plugin [TRACE][13:41] C:/Program Files (x86)/Unipro UGENE/plugins/psipred.plugin [TRACE][13:41] C:/Program Files (x86)/Unipro UGENE/plugins/enzymes.plugin [TRACE][13:41] C:/Program Files (x86)/Unipro UGENE/plugins/bowtie.plugin [TRACE][13:41] C:/Program Files (x86)/Unipro UGENE/plugins/phylip.plugin [TRACE][13:41] C:/Program Files (x86)/Unipro UGENE/plugins/dna_export.plugin [TRACE][13:41] C:/Program Files (x86)/Unipro UGENE/plugins/dbi_sqlite.plugin [TRACE][13:41] C:/Program Files (x86)/Unipro UGENE/plugins/dna_stat.plugin [TRACE][13:41] C:/Program Files (x86)/Unipro UGENE/plugins/expert_discovery.plugin [TRACE][13:41] C:/Program Files (x86)/Unipro UGENE/plugins/chroma_view.plugin [TRACE][13:41] C:/Program Files (x86)/Unipro UGENE/plugins/hmm3.plugin [TRACE][13:41] C:/Program Files (x86)/Unipro UGENE/plugins/dbi_bam.plugin [TRACE][13:41] C:/Program Files (x86)/Unipro UGENE/plugins/remote_service.plugin [TRACE][13:41] C:/Program Files (x86)/Unipro UGENE/plugins/external_tool_support.plugin [TRACE][13:41] C:/Program Files (x86)/Unipro UGENE/plugins/annotator.plugin [TRACE][13:41] C:/Program Files (x86)/Unipro UGENE/plugins/circular_view.plugin [TRACE][13:41] C:/Program Files (x86)/Unipro UGENE/plugins/smith_waterman.plugin [TRACE][13:41] C:/Program Files (x86)/Unipro UGENE/plugins/umuscle.plugin [TRACE][13:41] C:/Program Files (x86)/Unipro UGENE/plugins/repeat_finder.plugin [TRACE][13:41] C:/Program Files (x86)/Unipro UGENE/plugins/remote_blast.plugin [TRACE][13:41] C:/Program Files (x86)/Unipro UGENE/plugins/dna_graphpack.plugin [TRACE][13:41] C:/Program Files (x86)/Unipro UGENE/plugins/opencl_support.plugin [TRACE][13:41] C:/Program Files (x86)/Unipro UGENE/plugins/dna_flexibility.plugin [TRACE][13:41] C:/Program Files (x86)/Unipro UGENE/plugins/kalign.plugin [TRACE][13:41] C:/Program Files (x86)/Unipro UGENE/plugins/primer3.plugin [TRACE][13:41] End of the list [DETAILS][13:41] Registering new task: Loading start up plugins [TRACE][13:41] Warn! Format has no description: Swiss-Prot [TRACE][13:41] Warn! Format has no description: ABIF [TRACE][13:41] Warn! Format has no description: SCF [TRACE][13:41] Warn! Format has no description: CLUSTALW [TRACE][13:41] Warn! Format has no description: Stockholm [TRACE][13:41] Warn! Format has no description: Index [TRACE][13:41] Warn! Format has no description: MMDB [TRACE][13:41] Warn! Format has no description: GFF [TRACE][13:41] Warn! Format has no description: NEXUS [TRACE][13:41] Warn! Format has no description: SAM [TRACE][13:41] Warn! Format has no description: Mega [TRACE][13:41] Warn! Format has no description: ACE [TRACE][13:41] Warn! Format has no description: pDRAW [DETAILS][13:41] Reading substitution matrix from C:/Program Files (x86)/Unipro UGENE/data/weight_matrix/blosum100.txt [DETAILS][13:41] Reading substitution matrix from C:/Program Files (x86)/Unipro UGENE/data/weight_matrix/blosum30.txt [DETAILS][13:41] Reading substitution matrix from C:/Program Files (x86)/Unipro UGENE/data/weight_matrix/blosum35.txt [DETAILS][13:41] Reading substitution matrix from C:/Program Files (x86)/Unipro UGENE/data/weight_matrix/blosum40.txt [DETAILS][13:41] Reading substitution matrix from C:/Program Files (x86)/Unipro UGENE/data/weight_matrix/blosum45.txt [DETAILS][13:41] Reading substitution matrix from C:/Program Files (x86)/Unipro UGENE/data/weight_matrix/blosum50.txt [DETAILS][13:41] Reading substitution matrix from C:/Program Files (x86)/Unipro UGENE/data/weight_matrix/blosum55.txt [DETAILS][13:41] Reading substitution matrix from C:/Program Files (x86)/Unipro UGENE/data/weight_matrix/blosum60.txt [DETAILS][13:41] Reading substitution matrix from C:/Program Files (x86)/Unipro UGENE/data/weight_matrix/blosum62.txt [DETAILS][13:41] Reading substitution matrix from C:/Program Files (x86)/Unipro UGENE/data/weight_matrix/blosum65.txt [DETAILS][13:41] Reading substitution matrix from C:/Program Files (x86)/Unipro UGENE/data/weight_matrix/blosum70.txt [DETAILS][13:41] Reading substitution matrix from C:/Program Files (x86)/Unipro UGENE/data/weight_matrix/blosum75.txt [DETAILS][13:41] Reading substitution matrix from C:/Program Files (x86)/Unipro UGENE/data/weight_matrix/blosum80.txt [DETAILS][13:41] Reading substitution matrix from C:/Program Files (x86)/Unipro UGENE/data/weight_matrix/blosum85.txt [DETAILS][13:41] Reading substitution matrix from C:/Program Files (x86)/Unipro UGENE/data/weight_matrix/blosum90.txt [DETAILS][13:41] Reading substitution matrix from C:/Program Files (x86)/Unipro UGENE/data/weight_matrix/blosumn.txt [DETAILS][13:41] Reading substitution matrix from C:/Program Files (x86)/Unipro UGENE/data/weight_matrix/dayhoff.txt [DETAILS][13:41] Reading substitution matrix from C:/Program Files (x86)/Unipro UGENE/data/weight_matrix/dna.txt [DETAILS][13:41] Reading substitution matrix from C:/Program Files (x86)/Unipro UGENE/data/weight_matrix/gonnet.txt [DETAILS][13:41] Reading substitution matrix from C:/Program Files (x86)/Unipro UGENE/data/weight_matrix/identity.txt [DETAILS][13:41] Reading substitution matrix from C:/Program Files (x86)/Unipro UGENE/data/weight_matrix/match.txt [DETAILS][13:41] Reading substitution matrix from C:/Program Files (x86)/Unipro UGENE/data/weight_matrix/md_10.txt [DETAILS][13:41] Reading substitution matrix from C:/Program Files (x86)/Unipro UGENE/data/weight_matrix/md_20.txt [DETAILS][13:41] Reading substitution matrix from C:/Program Files (x86)/Unipro UGENE/data/weight_matrix/md_40.txt [DETAILS][13:41] Reading substitution matrix from C:/Program Files (x86)/Unipro UGENE/data/weight_matrix/nuc.4.4.txt [DETAILS][13:41] Reading substitution matrix from C:/Program Files (x86)/Unipro UGENE/data/weight_matrix/pam10.txt [DETAILS][13:41] Reading substitution matrix from C:/Program Files (x86)/Unipro UGENE/data/weight_matrix/pam100.txt [DETAILS][13:41] Reading substitution matrix from C:/Program Files (x86)/Unipro UGENE/data/weight_matrix/pam110.txt [DETAILS][13:41] Reading substitution matrix from C:/Program Files (x86)/Unipro UGENE/data/weight_matrix/pam120.cdi.txt [DETAILS][13:41] Reading substitution matrix from C:/Program Files (x86)/Unipro UGENE/data/weight_matrix/pam120.txt [DETAILS][13:41] Reading substitution matrix from C:/Program Files (x86)/Unipro UGENE/data/weight_matrix/pam130.txt [DETAILS][13:41] Reading substitution matrix from C:/Program Files (x86)/Unipro UGENE/data/weight_matrix/pam140.txt [DETAILS][13:41] Reading substitution matrix from C:/Program Files (x86)/Unipro UGENE/data/weight_matrix/pam150.txt [DETAILS][13:41] Reading substitution matrix from C:/Program Files (x86)/Unipro UGENE/data/weight_matrix/pam160.cdi.txt [DETAILS][13:41] Reading substitution matrix from C:/Program Files (x86)/Unipro UGENE/data/weight_matrix/pam160.txt [DETAILS][13:41] Reading substitution matrix from C:/Program Files (x86)/Unipro UGENE/data/weight_matrix/pam170.txt [DETAILS][13:41] Reading substitution matrix from C:/Program Files (x86)/Unipro UGENE/data/weight_matrix/pam180.txt [DETAILS][13:41] Reading substitution matrix from C:/Program Files (x86)/Unipro UGENE/data/weight_matrix/pam190.txt [DETAILS][13:41] Reading substitution matrix from C:/Program Files (x86)/Unipro UGENE/data/weight_matrix/pam20.txt [DETAILS][13:41] Reading substitution matrix from C:/Program Files (x86)/Unipro UGENE/data/weight_matrix/pam200.cdi.txt [DETAILS][13:41] Reading substitution matrix from C:/Program Files (x86)/Unipro UGENE/data/weight_matrix/pam200.txt [DETAILS][13:41] Reading substitution matrix from C:/Program Files (x86)/Unipro UGENE/data/weight_matrix/pam210.txt [DETAILS][13:41] Reading substitution matrix from C:/Program Files (x86)/Unipro UGENE/data/weight_matrix/pam220.txt [DETAILS][13:41] Reading substitution matrix from C:/Program Files (x86)/Unipro UGENE/data/weight_matrix/pam230.txt [DETAILS][13:41] Reading substitution matrix from C:/Program Files (x86)/Unipro UGENE/data/weight_matrix/pam240.txt [DETAILS][13:41] Reading substitution matrix from C:/Program Files (x86)/Unipro UGENE/data/weight_matrix/pam250.cdi.txt [DETAILS][13:41] Reading substitution matrix from C:/Program Files (x86)/Unipro UGENE/data/weight_matrix/pam250.txt [DETAILS][13:41] Reading substitution matrix from C:/Program Files (x86)/Unipro UGENE/data/weight_matrix/pam260.txt [DETAILS][13:41] Reading substitution matrix from C:/Program Files (x86)/Unipro UGENE/data/weight_matrix/pam270.txt [DETAILS][13:41] Reading substitution matrix from C:/Program Files (x86)/Unipro UGENE/data/weight_matrix/pam280.txt [DETAILS][13:41] Reading substitution matrix from C:/Program Files (x86)/Unipro UGENE/data/weight_matrix/pam290.txt [DETAILS][13:41] Reading substitution matrix from C:/Program Files (x86)/Unipro UGENE/data/weight_matrix/pam30.txt [DETAILS][13:41] Reading substitution matrix from C:/Program Files (x86)/Unipro UGENE/data/weight_matrix/pam300.txt [DETAILS][13:41] Reading substitution matrix from C:/Program Files (x86)/Unipro UGENE/data/weight_matrix/pam310.txt [DETAILS][13:41] Reading substitution matrix from C:/Program Files (x86)/Unipro UGENE/data/weight_matrix/pam320.txt [DETAILS][13:41] Reading substitution matrix from C:/Program Files (x86)/Unipro UGENE/data/weight_matrix/pam330.txt [DETAILS][13:41] Reading substitution matrix from C:/Program Files (x86)/Unipro UGENE/data/weight_matrix/pam340.txt [DETAILS][13:41] Reading substitution matrix from C:/Program Files (x86)/Unipro UGENE/data/weight_matrix/pam350.txt [DETAILS][13:41] Reading substitution matrix from C:/Program Files (x86)/Unipro UGENE/data/weight_matrix/pam360.txt [DETAILS][13:41] Reading substitution matrix from C:/Program Files (x86)/Unipro UGENE/data/weight_matrix/pam370.txt [DETAILS][13:41] Reading substitution matrix from C:/Program Files (x86)/Unipro UGENE/data/weight_matrix/pam380.txt [DETAILS][13:41] Reading substitution matrix from C:/Program Files (x86)/Unipro UGENE/data/weight_matrix/pam390.txt [DETAILS][13:41] Reading substitution matrix from C:/Program Files (x86)/Unipro UGENE/data/weight_matrix/pam40.cdi.txt [DETAILS][13:41] Reading substitution matrix from C:/Program Files (x86)/Unipro UGENE/data/weight_matrix/pam40.txt [DETAILS][13:41] Reading substitution matrix from C:/Program Files (x86)/Unipro UGENE/data/weight_matrix/pam400.txt [DETAILS][13:41] Reading substitution matrix from C:/Program Files (x86)/Unipro UGENE/data/weight_matrix/pam410.txt [DETAILS][13:41] Reading substitution matrix from C:/Program Files (x86)/Unipro UGENE/data/weight_matrix/pam420.txt [DETAILS][13:41] Reading substitution matrix from C:/Program Files (x86)/Unipro UGENE/data/weight_matrix/pam430.txt [DETAILS][13:41] Reading substitution matrix from C:/Program Files (x86)/Unipro UGENE/data/weight_matrix/pam440.txt [DETAILS][13:41] Reading substitution matrix from C:/Program Files (x86)/Unipro UGENE/data/weight_matrix/pam450.txt [DETAILS][13:41] Reading substitution matrix from C:/Program Files (x86)/Unipro UGENE/data/weight_matrix/pam460.txt [DETAILS][13:41] Reading substitution matrix from C:/Program Files (x86)/Unipro UGENE/data/weight_matrix/pam470.txt [DETAILS][13:41] Reading substitution matrix from C:/Program Files (x86)/Unipro UGENE/data/weight_matrix/pam480.txt [DETAILS][13:41] Reading substitution matrix from C:/Program Files (x86)/Unipro UGENE/data/weight_matrix/pam490.txt [DETAILS][13:41] Reading substitution matrix from C:/Program Files (x86)/Unipro UGENE/data/weight_matrix/pam50.txt [DETAILS][13:41] Reading substitution matrix from C:/Program Files (x86)/Unipro UGENE/data/weight_matrix/pam500.txt [DETAILS][13:41] Reading substitution matrix from C:/Program Files (x86)/Unipro UGENE/data/weight_matrix/pam60.txt [DETAILS][13:41] Reading substitution matrix from C:/Program Files (x86)/Unipro UGENE/data/weight_matrix/pam70.txt [DETAILS][13:41] Reading substitution matrix from C:/Program Files (x86)/Unipro UGENE/data/weight_matrix/pam80.cdi.txt [DETAILS][13:41] Reading substitution matrix from C:/Program Files (x86)/Unipro UGENE/data/weight_matrix/pam80.txt [DETAILS][13:41] Reading substitution matrix from C:/Program Files (x86)/Unipro UGENE/data/weight_matrix/pam90.txt [DETAILS][13:41] Reading substitution matrix from C:/Program Files (x86)/Unipro UGENE/data/weight_matrix/rna.txt [DETAILS][13:41] Reading substitution matrix from C:/Program Files (x86)/Unipro UGENE/data/weight_matrix/vtml160.txt [DETAILS][13:41] Reading substitution matrix from C:/Program Files (x86)/Unipro UGENE/data/weight_matrix/vtml200.txt [DETAILS][13:41] Loading OPENCL driver library [DETAILS][13:41] Cannot load OpenCL library. Error while loading OpenCL [DETAILS][13:41] Registering new task: Register 'PluginViewer' service [DETAILS][13:41] Registering new task: Register 'ProjectView' service [INFO][13:41] UGENE started [DETAILS][13:41] Registering new task: Check for updates [TRACE][13:41] Log view update time 0 millis [TRACE][13:41] promoting task {Loading start up plugins} to 'Prepared' [TRACE][13:41] promoting task {Add plugin task: primer3} to 'Prepared' [TRACE][13:41] promoting task {Register 'PluginViewer' service} to 'Prepared' [TRACE][13:41] promoting task {Enable 'PluginViewer' service} to 'Prepared' [TRACE][13:41] promoting task {Enable PluginViewer} to 'Prepared' [TRACE][13:41] promoting task {Register 'ProjectView' service} to 'Prepared' [TRACE][13:41] promoting task {Enable 'ProjectView' service} to 'Prepared', error 'Required service is not enabled: ProjectView' [TRACE][13:41] promoting task {Check for updates} to 'Prepared' [INFO][13:41] Starting {Check for updates} task [TRACE][13:41] promoting task {Loading start up plugins} to 'Running' [TRACE][13:41] promoting task {Add plugin task: primer3} to 'Running' [TRACE][13:41] promoting task {Register 'PluginViewer' service} to 'Running' [TRACE][13:41] promoting task {Enable 'PluginViewer' service} to 'Running' [TRACE][13:41] promoting task {Enable PluginViewer} to 'Running' [TRACE][13:41] promoting task {Register 'ProjectView' service} to 'Running' [TRACE][13:41] promoting task {Enable 'ProjectView' service} to 'Running', error 'Required service is not enabled: ProjectView' [TRACE][13:41] acquiring resource: 'Threads':1, state: 1/1000 [TRACE][13:41] promoting task {Check for updates} to 'Running' [TRACE][13:41] promoting task {Enable 'ProjectView' service} to 'Finished', error 'Required service is not enabled: ProjectView' [TRACE][13:41] promoting task {Register 'ProjectView' service} to 'Finished' [TRACE][13:41] promoting task {Enable PluginViewer} to 'Finished' [TRACE][13:41] promoting task {Enable 'PluginViewer' service} to 'Finished' [TRACE][13:41] promoting task {Register 'PluginViewer' service} to 'Finished' [TRACE][13:41] promoting task {Add plugin task: primer3} to 'Finished' [TRACE][13:41] Unregistering task: Register 'PluginViewer' service [TRACE][13:41] Deleting task: Enable PluginViewer [TRACE][13:41] Deleting task: Enable 'PluginViewer' service [TRACE][13:41] Deleting task: Register 'PluginViewer' service [TRACE][13:41] Unregistering task: Register 'ProjectView' service [TRACE][13:41] Deleting task: Enable 'ProjectView' service [TRACE][13:41] Deleting task: Register 'ProjectView' service [TRACE][13:41] promoting task {Add plugin task: kalign} to 'Prepared' [TRACE][13:41] promoting task {Add plugin task: kalign} to 'Running' [TRACE][13:41] promoting task {Add plugin task: kalign} to 'Finished' [TRACE][13:41] promoting task {Add plugin task: dna_flexibility} to 'Prepared' [TRACE][13:41] promoting task {Add plugin task: dna_flexibility} to 'Running' [TRACE][13:41] promoting task {Add plugin task: dna_flexibility} to 'Finished' [TRACE][13:41] promoting task {Add plugin task: opencl_support} to 'Prepared' [TRACE][13:41] promoting task {Add plugin task: opencl_support} to 'Running' [DETAILS][13:41] Cannot load library: OpenCL [TRACE][13:41] promoting task {Add plugin task: opencl_support} to 'Finished' [TRACE][13:41] promoting task {Add plugin task: dna_graphpack} to 'Prepared' [TRACE][13:41] promoting task {Add plugin task: dna_graphpack} to 'Running' [TRACE][13:41] promoting task {Add plugin task: dna_graphpack} to 'Finished' [TRACE][13:41] promoting task {Add plugin task: remote_blast} to 'Prepared' [TRACE][13:41] promoting task {Add plugin task: remote_blast} to 'Running' [TRACE][13:41] promoting task {Add plugin task: remote_blast} to 'Finished' [TRACE][13:41] promoting task {Add plugin task: repeat_finder} to 'Prepared' [TRACE][13:41] promoting task {Add plugin task: repeat_finder} to 'Running' [TRACE][13:41] promoting task {Add plugin task: repeat_finder} to 'Finished' [TRACE][13:41] promoting task {Add plugin task: umuscle} to 'Prepared' [TRACE][13:41] promoting task {Add plugin task: umuscle} to 'Running' [TRACE][13:41] promoting task {Add plugin task: umuscle} to 'Finished' [TRACE][13:41] promoting task {Add plugin task: smith_waterman} to 'Prepared' [TRACE][13:41] promoting task {Add plugin task: smith_waterman} to 'Running' [TRACE][13:41] Registering classic SW implementation [TRACE][13:41] Registering SSE2 SW implementation [TRACE][13:41] promoting task {Add plugin task: smith_waterman} to 'Finished' [TRACE][13:41] promoting task {Add plugin task: circular_view} to 'Prepared' [TRACE][13:41] promoting task {Add plugin task: circular_view} to 'Running' [TRACE][13:41] promoting task {Add plugin task: circular_view} to 'Finished' [TRACE][13:41] promoting task {Add plugin task: annotator} to 'Prepared' [TRACE][13:41] promoting task {Add plugin task: annotator} to 'Running' [TRACE][13:41] promoting task {Add plugin task: annotator} to 'Finished' [TRACE][13:41] promoting task {Add plugin task: external_tool_support} to 'Prepared' [TRACE][13:41] promoting task {Add plugin task: external_tool_support} to 'Running' [DETAILS][13:41] Registering new task: Register 'External tools support' service [TRACE][13:41] promoting task {Add plugin task: external_tool_support} to 'Finished' [TRACE][13:41] promoting task {Add plugin task: remote_service} to 'Prepared' [TRACE][13:41] promoting task {Register 'External tools support' service} to 'Prepared' [TRACE][13:41] promoting task {Enable 'External tools support' service} to 'Prepared', error 'Required service is not enabled: External tools support' [TRACE][13:41] promoting task {Add plugin task: remote_service} to 'Running' [TRACE][13:41] promoting task {Register 'External tools support' service} to 'Running' [TRACE][13:41] promoting task {Enable 'External tools support' service} to 'Running', error 'Required service is not enabled: External tools support' [TRACE][13:41] promoting task {Enable 'External tools support' service} to 'Finished', error 'Required service is not enabled: External tools support' [TRACE][13:41] promoting task {Register 'External tools support' service} to 'Finished' [TRACE][13:41] promoting task {Add plugin task: remote_service} to 'Finished' [TRACE][13:41] Unregistering task: Register 'External tools support' service [TRACE][13:41] Deleting task: Enable 'External tools support' service [TRACE][13:41] Deleting task: Register 'External tools support' service [TRACE][13:41] promoting task {Add plugin task: dbi_bam} to 'Prepared' [TRACE][13:41] promoting task {Add plugin task: dbi_bam} to 'Running' [TRACE][13:41] promoting task {Add plugin task: dbi_bam} to 'Finished' [TRACE][13:41] promoting task {Add plugin task: hmm3} to 'Prepared' [TRACE][13:41] promoting task {Add plugin task: hmm3} to 'Running' [TRACE][13:41] Warn! Format has no description: Profile HMM format [TRACE][13:41] promoting task {Add plugin task: hmm3} to 'Finished' [TRACE][13:41] promoting task {Add plugin task: chroma_view} to 'Prepared' [TRACE][13:41] promoting task {Add plugin task: chroma_view} to 'Running' [TRACE][13:41] promoting task {Add plugin task: chroma_view} to 'Finished' [TRACE][13:41] promoting task {Add plugin task: expert_discovery} to 'Prepared' [TRACE][13:41] promoting task {Add plugin task: expert_discovery} to 'Running' [TRACE][13:41] promoting task {Add plugin task: expert_discovery} to 'Finished' [TRACE][13:41] promoting task {Add plugin task: dna_stat} to 'Prepared' [TRACE][13:41] promoting task {Add plugin task: dna_stat} to 'Running' [TRACE][13:41] promoting task {Add plugin task: dna_stat} to 'Finished' [TRACE][13:41] promoting task {Add plugin task: dbi_sqlite} to 'Prepared' [TRACE][13:41] promoting task {Add plugin task: dbi_sqlite} to 'Running' [TRACE][13:41] Warn! Format has no description: UGENE Database [TRACE][13:41] promoting task {Add plugin task: dbi_sqlite} to 'Finished' [TRACE][13:41] promoting task {Add plugin task: dna_export} to 'Prepared' [TRACE][13:41] promoting task {Add plugin task: dna_export} to 'Running' [DETAILS][13:41] Registering new task: Register 'DNA export service' service [TRACE][13:41] promoting task {Add plugin task: dna_export} to 'Finished' [TRACE][13:41] promoting task {Add plugin task: phylip} to 'Prepared' [TRACE][13:41] promoting task {Register 'DNA export service' service} to 'Prepared' [TRACE][13:41] promoting task {Enable 'DNA export service' service} to 'Prepared', error 'Required service is not enabled: DNA export service' [TRACE][13:41] promoting task {Add plugin task: phylip} to 'Running' [TRACE][13:41] promoting task {Register 'DNA export service' service} to 'Running' [TRACE][13:41] promoting task {Enable 'DNA export service' service} to 'Running', error 'Required service is not enabled: DNA export service' [TRACE][13:41] promoting task {Enable 'DNA export service' service} to 'Finished', error 'Required service is not enabled: DNA export service' [TRACE][13:41] promoting task {Register 'DNA export service' service} to 'Finished' [TRACE][13:41] promoting task {Add plugin task: phylip} to 'Finished' [TRACE][13:41] Unregistering task: Register 'DNA export service' service [TRACE][13:41] Deleting task: Enable 'DNA export service' service [TRACE][13:41] Deleting task: Register 'DNA export service' service [TRACE][13:41] promoting task {Add plugin task: bowtie} to 'Prepared' [TRACE][13:41] promoting task {Add plugin task: bowtie} to 'Running' [TRACE][13:41] promoting task {Add plugin task: bowtie} to 'Finished' [TRACE][13:41] promoting task {Add plugin task: enzymes} to 'Prepared' [TRACE][13:41] promoting task {Add plugin task: enzymes} to 'Running' [TRACE][13:41] promoting task {Add plugin task: enzymes} to 'Finished' [TRACE][13:41] promoting task {Add plugin task: psipred} to 'Prepared' [TRACE][13:41] promoting task {Add plugin task: psipred} to 'Running' [TRACE][13:41] promoting task {Add plugin task: psipred} to 'Finished' [TRACE][13:41] promoting task {Add plugin task: sitecon} to 'Prepared' [TRACE][13:41] promoting task {Add plugin task: sitecon} to 'Running' [TRACE][13:41] promoting task {Add plugin task: sitecon} to 'Finished' [TRACE][13:41] promoting task {Add plugin task: workflow_designer} to 'Prepared' [TRACE][13:41] promoting task {Add plugin task: workflow_designer} to 'Running' [TRACE][13:41] Warn! Format has no description: Workflow Schema [DETAILS][13:41] Registering new task: Register 'Workflow Designer' service [TRACE][13:41] promoting task {Add plugin task: workflow_designer} to 'Finished' [TRACE][13:41] promoting task {Add plugin task: biostruct3d_view} to 'Prepared' [TRACE][13:41] promoting task {Register 'Workflow Designer' service} to 'Prepared' [TRACE][13:41] promoting task {Enable 'Workflow Designer' service} to 'Prepared' [TRACE][13:41] promoting task {Load workflow samples} to 'Prepared' [TRACE][13:41] promoting task {Add plugin task: biostruct3d_view} to 'Running' [TRACE][13:41] promoting task {Register 'Workflow Designer' service} to 'Running' [TRACE][13:41] promoting task {Enable 'Workflow Designer' service} to 'Running' [TRACE][13:41] acquiring resource: 'Threads':1, state: 2/1000 [TRACE][13:41] promoting task {Load workflow samples} to 'Running' [TRACE][13:41] promoting task {Add plugin task: biostruct3d_view} to 'Finished' [TRACE][13:41] promoting task {Add plugin task: query_designer} to 'Prepared' [TRACE][13:41] promoting task {Add plugin task: query_designer} to 'Running' [TRACE][13:41] Warn! Format has no description: Query Schema [DETAILS][13:41] Registering new task: Register 'Query Designer' service [TRACE][13:41] promoting task {Add plugin task: query_designer} to 'Finished' [TRACE][13:41] releasing resource: 'Threads':1, state: 1/1000 [TRACE][13:41] promoting task {Load workflow samples} to 'Finished' [TRACE][13:41] promoting task {Enable 'Workflow Designer' service} to 'Finished' [TRACE][13:41] promoting task {Register 'Workflow Designer' service} to 'Finished' [TRACE][13:41] Unregistering task: Register 'Workflow Designer' service [TRACE][13:41] Deleting task: Load workflow samples [TRACE][13:41] Deleting task: Enable 'Workflow Designer' service [TRACE][13:41] Deleting task: Register 'Workflow Designer' service [TRACE][13:41] promoting task {Add plugin task: ball} to 'Prepared' [TRACE][13:41] promoting task {Register 'Query Designer' service} to 'Prepared' [TRACE][13:41] promoting task {Enable 'Query Designer' service} to 'Prepared' [TRACE][13:41] promoting task {Load query samples} to 'Prepared' [TRACE][13:41] promoting task {Loading document from C:/Program Files (x86)/Unipro UGENE/data/query_samples/RepeatsWithORF.uql} to 'Prepared' [TRACE][13:41] promoting task {Add plugin task: ball} to 'Running' [TRACE][13:41] promoting task {Register 'Query Designer' service} to 'Running' [TRACE][13:41] promoting task {Enable 'Query Designer' service} to 'Running' [TRACE][13:41] promoting task {Load query samples} to 'Running' [TRACE][13:41] acquiring resource: 'Threads':1, state: 2/1000 [TRACE][13:41] promoting task {Loading document from C:/Program Files (x86)/Unipro UGENE/data/query_samples/RepeatsWithORF.uql} to 'Running' [TRACE][13:41] releasing resource: 'Threads':1, state: 1/1000 [TRACE][13:41] promoting task {Loading document from C:/Program Files (x86)/Unipro UGENE/data/query_samples/RepeatsWithORF.uql} to 'Finished' [TRACE][13:41] promoting task {Add plugin task: ball} to 'Finished' [TRACE][13:41] promoting task {Add plugin task: ptools} to 'Prepared' [TRACE][13:41] promoting task {Loading document from C:/Program Files (x86)/Unipro UGENE/data/query_samples/SimpleGene.uql} to 'Prepared' [TRACE][13:41] promoting task {Add plugin task: ptools} to 'Running' [TRACE][13:41] acquiring resource: 'Threads':1, state: 2/1000 [TRACE][13:41] promoting task {Loading document from C:/Program Files (x86)/Unipro UGENE/data/query_samples/SimpleGene.uql} to 'Running' [DETAILS][13:41] Loading scheme from file: C:/Program Files (x86)/Unipro UGENE/data/query_samples/RepeatsWithORF.uql [DETAILS][13:41] Loading scheme from file: C:/Program Files (x86)/Unipro UGENE/data/query_samples/SimpleGene.uql [TRACE][13:41] releasing resource: 'Threads':1, state: 1/1000 [TRACE][13:41] promoting task {Loading document from C:/Program Files (x86)/Unipro UGENE/data/query_samples/SimpleGene.uql} to 'Finished' [TRACE][13:41] promoting task {Add plugin task: ptools} to 'Finished' [TRACE][13:41] promoting task {Load query samples} to 'Finished' [TRACE][13:41] promoting task {Enable 'Query Designer' service} to 'Finished' [TRACE][13:41] promoting task {Register 'Query Designer' service} to 'Finished' [TRACE][13:41] Unregistering task: Register 'Query Designer' service [TRACE][13:41] Deleting task: Loading document from C:/Program Files (x86)/Unipro UGENE/data/query_samples/RepeatsWithORF.uql [TRACE][13:41] Deleting task: Loading document from C:/Program Files (x86)/Unipro UGENE/data/query_samples/SimpleGene.uql [TRACE][13:41] Deleting task: Load query samples [TRACE][13:41] Deleting task: Enable 'Query Designer' service [TRACE][13:41] Deleting task: Register 'Query Designer' service [TRACE][13:41] promoting task {Add plugin task: orf_marker} to 'Prepared' [TRACE][13:41] promoting task {Add plugin task: orf_marker} to 'Running' [TRACE][13:41] promoting task {Add plugin task: orf_marker} to 'Finished' [TRACE][13:41] promoting task {Add plugin task: weight_matrix} to 'Prepared' [TRACE][13:41] promoting task {Add plugin task: weight_matrix} to 'Running' [TRACE][13:41] promoting task {Add plugin task: weight_matrix} to 'Finished' [TRACE][13:41] promoting task {Add plugin task: hmm2} to 'Prepared' [TRACE][13:41] promoting task {Add plugin task: hmm2} to 'Running' [TRACE][13:41] promoting task {Add plugin task: hmm2} to 'Finished' [TRACE][13:41] promoting task {Add plugin task: dbi_file} to 'Prepared' [TRACE][13:41] promoting task {Add plugin task: dbi_file} to 'Running' [TRACE][13:41] promoting task {Add plugin task: dbi_file} to 'Finished' [TRACE][13:41] promoting task {Add plugin task: gor4} to 'Prepared' [TRACE][13:41] promoting task {Add plugin task: gor4} to 'Running' [TRACE][13:41] promoting task {Add plugin task: gor4} to 'Finished' [TRACE][13:41] promoting task {Add plugin task: dotplot} to 'Prepared' [TRACE][13:41] promoting task {Add plugin task: dotplot} to 'Running' [TRACE][13:41] promoting task {Add plugin task: dotplot} to 'Finished' [TRACE][13:41] promoting task {Add plugin task: assembly_browser} to 'Prepared' [TRACE][13:41] promoting task {Add plugin task: assembly_browser} to 'Running' [TRACE][13:41] promoting task {Add plugin task: assembly_browser} to 'Finished' [TRACE][13:41] promoting task {Add plugin task: genome_aligner} to 'Prepared' [TRACE][13:41] promoting task {Add plugin task: genome_aligner} to 'Running' [TRACE][13:41] promoting task {Add plugin task: genome_aligner} to 'Finished' [DETAILS][13:41] Registering new task: Open project/document [TRACE][13:41] promoting task {Loading start up plugins} to 'Finished' [TRACE][13:41] Unregistering task: Loading start up plugins [TRACE][13:41] Deleting task: Add plugin task: primer3 [TRACE][13:41] Deleting task: Add plugin task: kalign [TRACE][13:41] Deleting task: Add plugin task: dna_flexibility [TRACE][13:41] Deleting task: Add plugin task: opencl_support [TRACE][13:41] Deleting task: Add plugin task: dna_graphpack [TRACE][13:41] Deleting task: Add plugin task: remote_blast [TRACE][13:41] Deleting task: Add plugin task: repeat_finder [TRACE][13:41] Deleting task: Add plugin task: umuscle [TRACE][13:41] Deleting task: Add plugin task: smith_waterman [TRACE][13:41] Deleting task: Add plugin task: circular_view [TRACE][13:41] Deleting task: Add plugin task: annotator [TRACE][13:41] Deleting task: Add plugin task: external_tool_support [TRACE][13:41] Deleting task: Add plugin task: remote_service [TRACE][13:41] Deleting task: Add plugin task: dbi_bam [TRACE][13:41] Deleting task: Add plugin task: hmm3 [TRACE][13:41] Deleting task: Add plugin task: chroma_view [TRACE][13:41] Deleting task: Add plugin task: expert_discovery [TRACE][13:41] Deleting task: Add plugin task: dna_stat [TRACE][13:41] Deleting task: Add plugin task: dbi_sqlite [TRACE][13:41] Deleting task: Add plugin task: dna_export [TRACE][13:41] Deleting task: Add plugin task: phylip [TRACE][13:41] Deleting task: Add plugin task: bowtie [TRACE][13:41] Deleting task: Add plugin task: enzymes [TRACE][13:41] Deleting task: Add plugin task: psipred [TRACE][13:41] Deleting task: Add plugin task: sitecon [TRACE][13:41] Deleting task: Add plugin task: workflow_designer [TRACE][13:41] Deleting task: Add plugin task: biostruct3d_view [TRACE][13:41] Deleting task: Add plugin task: query_designer [TRACE][13:41] Deleting task: Add plugin task: ball [TRACE][13:41] Deleting task: Add plugin task: ptools [TRACE][13:41] Deleting task: Add plugin task: orf_marker [TRACE][13:41] Deleting task: Add plugin task: weight_matrix [TRACE][13:41] Deleting task: Add plugin task: hmm2 [TRACE][13:41] Deleting task: Add plugin task: dbi_file [TRACE][13:41] Deleting task: Add plugin task: gor4 [TRACE][13:41] Deleting task: Add plugin task: dotplot [TRACE][13:41] Deleting task: Add plugin task: assembly_browser [TRACE][13:41] Deleting task: Add plugin task: genome_aligner [TRACE][13:41] Deleting task: Loading start up plugins [TRACE][13:41] promoting task {Open project/document} to 'Prepared' [TRACE][13:41] promoting task {Load project} to 'Prepared' [TRACE][13:41] promoting task {Open project/document} to 'Running' [TRACE][13:41] acquiring resource: 'Threads':1, state: 2/1000 [TRACE][13:41] promoting task {Load project} to 'Running' [DETAILS][13:41] Loading project from: E:/Documents/Projets/Splicing FAT1/Séqeuncage/Organes/Sequencage FAT1 Diff Organes.uprj [TRACE][13:41] releasing resource: 'Threads':1, state: 1/1000 [DETAILS][13:41] Adding document to the project: E:/Documents/Projets/Splicing FAT1/Séqeuncage/Organes/Seq 1.fa [DETAILS][13:41] Adding document to the project: E:/Documents/Projets/Splicing FAT1/Séqeuncage/Organes/MultiFasta II.fa [DETAILS][13:41] Adding document to the project: E:/Documents/Projets/Splicing FAT1/Séqeuncage/Organes/MultiFasta III.fa [DETAILS][13:41] Adding document to the project: E:/Documents/Projets/Splicing FAT1/Séqeuncage/Organes/MultiFasta IIb.fa [DETAILS][13:41] Adding document to the project: E:/Documents/Projets/Splicing FAT1/Séqeuncage/Organes/MultiFasta IIIb.fa [INFO][13:41] Project loaded: E:/Documents/Projets/Splicing FAT1/Séqeuncage/Organes/Sequencage FAT1 Diff Organes.uprj [TRACE][13:41] promoting task {Load project} to 'Finished' [TRACE][13:41] promoting task {Register project} to 'Prepared' [TRACE][13:41] promoting task {Register 'Project' service} to 'Prepared' [TRACE][13:41] promoting task {Enable 'Project' service} to 'Prepared' [TRACE][13:41] promoting task {Enable Project} to 'Prepared' [TRACE][13:41] promoting task {Register project} to 'Running' [TRACE][13:41] promoting task {Register 'Project' service} to 'Running' [TRACE][13:41] promoting task {Enable 'Project' service} to 'Running' [TRACE][13:41] promoting task {Enable Project} to 'Running' [TRACE][13:41] promoting task {Enable Project} to 'Finished' [TRACE][13:41] promoting task {Enable 'Project' service} to 'Finished' [TRACE][13:41] promoting task {Register 'Project' service} to 'Finished' [TRACE][13:41] promoting task {Register project} to 'Finished' [TRACE][13:41] promoting task {Open project/document} to 'Finished' [TRACE][13:41] Unregistering task: Open project/document [TRACE][13:41] Deleting task: Load project [TRACE][13:41] Deleting task: Enable Project [TRACE][13:41] Deleting task: Enable 'Project' service [TRACE][13:41] Deleting task: Register 'Project' service [TRACE][13:41] Deleting task: Register project [TRACE][13:41] Deleting task: Open project/document [DETAILS][13:41] Registering new task: Enable 'ProjectView' service [TRACE][13:41] promoting task {Enable 'ProjectView' service} to 'Prepared' [TRACE][13:41] promoting task {Enable ProjectView} to 'Prepared' [TRACE][13:41] promoting task {Enable 'ProjectView' service} to 'Running' [TRACE][13:41] promoting task {Enable ProjectView} to 'Running' [TRACE][13:41] promoting task {Enable ProjectView} to 'Finished' [TRACE][13:41] promoting task {Enable 'ProjectView' service} to 'Finished' [TRACE][13:41] Unregistering task: Enable 'ProjectView' service [TRACE][13:41] Deleting task: Enable ProjectView [TRACE][13:41] Deleting task: Enable 'ProjectView' service [DETAILS][13:41] Registering new task: Enable 'External tools support' service [TRACE][13:41] promoting task {Enable 'External tools support' service} to 'Prepared' [TRACE][13:41] promoting task {Enable 'External tools support' service} to 'Running' [TRACE][13:41] promoting task {Enable 'External tools support' service} to 'Finished' [TRACE][13:41] Unregistering task: Enable 'External tools support' service [TRACE][13:41] Deleting task: Enable 'External tools support' service [DETAILS][13:41] Registering new task: Enable 'DNA export service' service [TRACE][13:41] promoting task {Enable 'DNA export service' service} to 'Prepared' [TRACE][13:41] promoting task {Enable 'DNA export service' service} to 'Running' [TRACE][13:41] promoting task {Enable 'DNA export service' service} to 'Finished' [TRACE][13:41] Unregistering task: Enable 'DNA export service' service [TRACE][13:41] Deleting task: Enable 'DNA export service' service [TRACE][13:41] releasing resource: 'Threads':1, state: 0/1000 [TRACE][13:41] promoting task {Check for updates} to 'Finished' [INFO][13:41] Task {Check for updates} finished [TRACE][13:41] Unregistering task: Check for updates [TRACE][13:41] Deleting task: Check for updates [TRACE][13:42] Log view update time 223 millis [TRACE][13:43] Log view update time 188 millis [DETAILS][13:43] Registering new task: Loading documents [TRACE][13:43] promoting task {Loading documents} to 'Prepared' [TRACE][13:43] promoting task {Opening view for document: test.fa} to 'Prepared' [TRACE][13:43] promoting task {Adding document to project: E:/Desktop/test.fa} to 'Prepared' [TRACE][13:43] promoting task {Loading documents} to 'Running' [TRACE][13:43] promoting task {Opening view for document: test.fa} to 'Running' [TRACE][13:43] promoting task {Adding document to project: E:/Desktop/test.fa} to 'Running' [DETAILS][13:43] Adding document to the project: E:/Desktop/test.fa [TRACE][13:43] promoting task {Adding document to project: E:/Desktop/test.fa} to 'Finished' [TRACE][13:43] promoting task {Load document: 'test.fa'} to 'Prepared' [DETAILS][13:43] Starting load document from E:/Desktop/test.fa, document format FASTA [DETAILS][13:43] resource 'Project Document::E:/Desktop/test.fa' is used by 'Load 'test.fa'' [TRACE][13:43] promoting task {Load 'test.fa'} to 'Prepared' [TRACE][13:43] load document:Memory resource 0 [TRACE][13:43] promoting task {Read document: 'test.fa'} to 'Prepared' [TRACE][13:43] promoting task {Load document: 'test.fa'} to 'Running' [TRACE][13:43] promoting task {Load 'test.fa'} to 'Running' [TRACE][13:43] acquiring resource: 'Threads':1, state: 1/1000 [TRACE][13:43] promoting task {Read document: 'test.fa'} to 'Running' [TRACE][13:43] releasing resource: 'Threads':1, state: 0/1000 [TRACE][13:43] promoting task {Read document: 'test.fa'} to 'Finished' [DETAILS][13:43] resource 'Project Document::E:/Desktop/test.fa' is released by 'Load 'test.fa'' [TRACE][13:43] promoting task {Load 'test.fa'} to 'Finished' [TRACE][13:43] promoting task {Open view} to 'Prepared' [TRACE][13:43] promoting task {Open 'test Multiple alignment'} to 'Prepared' [TRACE][13:43] promoting task {Open view} to 'Running' [TRACE][13:43] promoting task {Open 'test Multiple alignment'} to 'Running' [TRACE][13:43] Adding window: 'test Multiple alignment' [TRACE][13:43] Switching active MDI window from '' to 'test Multiple alignment' [TRACE][13:43] Updating active status for test.fa [TRACE][13:43] Updating active status for [m] Multiple alignment [TRACE][13:43] Project view now listens object events in 'test Multiple alignment' view [TRACE][13:43] promoting task {Open 'test Multiple alignment'} to 'Finished' [TRACE][13:43] promoting task {Open view} to 'Finished' [TRACE][13:43] promoting task {Load document: 'test.fa'} to 'Finished' [TRACE][13:43] promoting task {Opening view for document: test.fa} to 'Finished' [TRACE][13:43] promoting task {Loading documents} to 'Finished' [TRACE][13:43] Unregistering task: Loading documents [TRACE][13:43] Deleting task: Adding document to project: E:/Desktop/test.fa [TRACE][13:43] Deleting task: Read document: 'test.fa' [TRACE][13:43] Deleting task: Load 'test.fa' [TRACE][13:43] Deleting task: Open 'test Multiple alignment' [TRACE][13:43] Deleting task: Open view [TRACE][13:43] Deleting task: Load document: 'test.fa' [TRACE][13:43] Deleting task: Opening view for document: test.fa [TRACE][13:43] Deleting task: Loading documents [TRACE][13:43] Window deactivation, no MDI context switch, window: 'test Multiple alignment' [TRACE][13:43] Updating active status for test.fa [TRACE][13:43] Updating active status for [m] Multiple alignment [TRACE][13:43] Window activation, no MDI context switch, window: 'test Multiple alignment' [TRACE][13:43] Updating active status for test.fa [TRACE][13:43] Updating active status for [m] Multiple alignment [TRACE][13:43] Project view now listens object events in 'test Multiple alignment' view [TRACE][13:43] Log view update time 196 millis [TRACE][13:43] Window deactivation, no MDI context switch, window: 'test Multiple alignment' [TRACE][13:43] Updating active status for test.fa [TRACE][13:43] Updating active status for [m] Multiple alignment [TRACE][13:43] Window activation, no MDI context switch, window: 'test Multiple alignment' [TRACE][13:43] Updating active status for test.fa [TRACE][13:43] Updating active status for [m] Multiple alignment [TRACE][13:43] Project view now listens object events in 'test Multiple alignment' view [TRACE][13:43] Window deactivation, no MDI context switch, window: 'test Multiple alignment' [TRACE][13:43] Updating active status for test.fa [TRACE][13:43] Updating active status for [m] Multiple alignment [TRACE][13:44] Window activation, no MDI context switch, window: 'test Multiple alignment' [TRACE][13:44] Updating active status for test.fa [TRACE][13:44] Updating active status for [m] Multiple alignment [TRACE][13:44] Project view now listens object events in 'test Multiple alignment' view [DETAILS][13:44] Registering new task: Run Muscle alignment task [TRACE][13:44] promoting task {Run Muscle alignment task} to 'Prepared' [TRACE][13:44] load document:Memory resource 0 [TRACE][13:44] promoting task {Read document: 'test.fa'} to 'Prepared' [TRACE][13:44] promoting task {Run Muscle alignment task} to 'Running' [TRACE][13:44] acquiring resource: 'Threads':1, state: 1/1000 [TRACE][13:44] promoting task {Read document: 'test.fa'} to 'Running' [TRACE][13:44] releasing resource: 'Threads':1, state: 0/1000 [TRACE][13:44] promoting task {Read document: 'test.fa'} to 'Finished' [TRACE][13:44] promoting task {MUSCLE run in separate process align 'test.fa'} to 'Prepared' [TRACE][13:44] promoting task {Run workflow schema for task muscle} to 'Prepared' [TRACE][13:44] promoting task {Loading schema} to 'Prepared' [TRACE][13:44] promoting task {MUSCLE run in separate process align 'test.fa'} to 'Running' [TRACE][13:44] promoting task {Run workflow schema for task muscle} to 'Running' [TRACE][13:44] acquiring resource: 'Threads':1, state: 1/1000 [TRACE][13:44] promoting task {Loading schema} to 'Running' [DETAILS][13:44] Loading schema from file: data:schemas_private/muscle.uwl [TRACE][13:44] releasing resource: 'Threads':1, state: 0/1000 [TRACE][13:44] promoting task {Loading schema} to 'Finished' [TRACE][13:44] promoting task {Save document} to 'Prepared' [TRACE][13:44] acquiring resource: 'Threads':1, state: 1/1000 [TRACE][13:44] promoting task {Save document} to 'Running' [INFO][13:44] Saving document C:/Users/STPHAN~1/AppData/Local/Temp/Aj4668.fa [TRACE][13:44] releasing resource: 'Threads':1, state: 0/1000 [TRACE][13:44] promoting task {Save document} to 'Finished' [DETAILS][13:44] Schema name not specified [TRACE][13:44] promoting task {Execute workflow in separate process} to 'Prepared' [TRACE][13:44] promoting task {Execute iteration 'Default iteration'} to 'Prepared' [TRACE][13:44] promoting task {Save workflow schema task} to 'Prepared' [TRACE][13:44] promoting task {Execute workflow in separate process} to 'Running' [TRACE][13:44] promoting task {Execute iteration 'Default iteration'} to 'Running' [TRACE][13:44] acquiring resource: 'Threads':1, state: 1/1000 [TRACE][13:44] promoting task {Save workflow schema task} to 'Running' [TRACE][13:44] releasing resource: 'Threads':1, state: 0/1000 [TRACE][13:44] promoting task {Save workflow schema task} to 'Finished' [TRACE][13:44] Starting process: C:/Program Files (x86)/Unipro UGENE/ugene.exe --task=C:/Users/STPHAN~1/AppData/Local/Temp/CF4668.uwl --log-no-task-progress --log-level-info --ugene-output-progress-state --lang=en --ugene-output-error [TRACE][13:44] promoting task {Monitoring execution of workflow schema} to 'Prepared' [TRACE][13:44] promoting task {Monitoring execution of workflow schema} to 'Running' [TRACE][13:44] promoting task {Monitoring execution of workflow schema} to 'Finished' [TRACE][13:44] promoting task {Execute iteration 'Default iteration'} to 'Finished' [TRACE][13:44] promoting task {Execute workflow in separate process} to 'Finished' [TRACE][13:44] load document:Memory resource 0 [TRACE][13:44] promoting task {Read document: 'zj4668.fa'} to 'Prepared' [TRACE][13:44] acquiring resource: 'Threads':1, state: 1/1000 [TRACE][13:44] promoting task {Read document: 'zj4668.fa'} to 'Running' [TRACE][13:44] releasing resource: 'Threads':1, state: 0/1000 [TRACE][13:44] promoting task {Read document: 'zj4668.fa'} to 'Finished' [TRACE][13:44] promoting task {Run workflow schema for task muscle} to 'Finished' [TRACE][13:44] promoting task {MUSCLE run in separate process align 'test.fa'} to 'Finished' [TRACE][13:44] promoting task {Save document} to 'Prepared' [TRACE][13:44] acquiring resource: 'Threads':1, state: 1/1000 [TRACE][13:44] promoting task {Save document} to 'Running' [INFO][13:44] Saving document E:/Desktop/test.fa [TRACE][13:44] releasing resource: 'Threads':1, state: 0/1000 [TRACE][13:44] promoting task {Save document} to 'Finished' [TRACE][13:44] promoting task {Load document: 'test.fa'} to 'Prepared' [DETAILS][13:44] Starting load document from E:/Desktop/test.fa, document format FASTA [DETAILS][13:44] resource 'Project Document::E:/Desktop/test.fa' is used by 'Load 'test.fa'' [TRACE][13:44] promoting task {Load 'test.fa'} to 'Prepared' [TRACE][13:44] load document:Memory resource 0 [TRACE][13:44] promoting task {Read document: 'test.fa'} to 'Prepared' [TRACE][13:44] promoting task {Load document: 'test.fa'} to 'Running' [TRACE][13:44] promoting task {Load 'test.fa'} to 'Running' [TRACE][13:44] acquiring resource: 'Threads':1, state: 1/1000 [TRACE][13:44] promoting task {Read document: 'test.fa'} to 'Running' [TRACE][13:44] Objects renaming failed! Objects in doc: 2, names: 1 [TRACE][13:44] releasing resource: 'Threads':1, state: 0/1000 [TRACE][13:44] promoting task {Read document: 'test.fa'} to 'Finished' [DETAILS][13:44] resource 'Project Document::E:/Desktop/test.fa' is released by 'Load 'test.fa'' [TRACE][13:44] promoting task {Load 'test.fa'} to 'Finished' [TRACE][13:44] promoting task {Open view} to 'Prepared' [TRACE][13:44] promoting task {Open view} to 'Running' [TRACE][13:44] promoting task {Open view} to 'Finished' [TRACE][13:44] promoting task {Load document: 'test.fa'} to 'Finished' [TRACE][13:44] promoting task {Run Muscle alignment task} to 'Finished' [TRACE][13:44] Unregistering task: Run Muscle alignment task [TRACE][13:44] Deleting task: Read document: 'test.fa' [TRACE][13:44] Deleting task: Loading schema [TRACE][13:44] Deleting task: Save document [TRACE][13:44] Deleting task: Save workflow schema task [TRACE][13:44] Deleting task: Monitoring execution of workflow schema [TRACE][13:44] Deleting task: Execute iteration 'Default iteration' [TRACE][13:44] Deleting task: Execute workflow in separate process [TRACE][13:44] Deleting task: Read document: 'zj4668.fa' [TRACE][13:44] Deleting task: Run workflow schema for task muscle [TRACE][13:44] Deleting task: MUSCLE run in separate process align 'test.fa' [TRACE][13:44] Deleting task: Save document [TRACE][13:44] Deleting task: Read document: 'test.fa' [TRACE][13:44] Deleting task: Load 'test.fa' [TRACE][13:44] Deleting task: Open view [TRACE][13:44] Deleting task: Load document: 'test.fa' [TRACE][13:44] Deleting task: Run Muscle alignment task [TRACE][13:44] Window deactivation, no MDI context switch, window: 'test Multiple alignment' [TRACE][13:44] Updating active status for test.fa [TRACE][13:44] Updating active status for [m] Multiple alignment [TRACE][13:44] Window activation, no MDI context switch, window: 'test Multiple alignment' [TRACE][13:44] Updating active status for test.fa [TRACE][13:44] Updating active status for [m] Multiple alignment [TRACE][13:44] Project view now listens object events in 'test Multiple alignment' view [TRACE][13:44] Log view update time 239 millis [TRACE][13:45] Window deactivation, no MDI context switch, window: 'test Multiple alignment' [TRACE][13:45] Updating active status for test.fa [TRACE][13:45] Updating active status for [m] Multiple alignment [TRACE][13:45] Window activation, no MDI context switch, window: 'test Multiple alignment' [TRACE][13:45] Updating active status for test.fa [TRACE][13:45] Updating active status for [m] Multiple alignment [TRACE][13:45] Project view now listens object events in 'test Multiple alignment' view [TRACE][13:45] Log view update time 239 millis [TRACE][13:45] Window deactivation, no MDI context switch, window: 'test Multiple alignment' [TRACE][13:45] Updating active status for test.fa [TRACE][13:45] Updating active status for [m] Multiple alignment [TRACE][13:45] Window activation, no MDI context switch, window: 'test Multiple alignment' [TRACE][13:45] Updating active status for test.fa [TRACE][13:45] Updating active status for [m] Multiple alignment [TRACE][13:45] Project view now listens object events in 'test Multiple alignment' view [TRACE][13:45] Window deactivation, no MDI context switch, window: 'test Multiple alignment' [TRACE][13:45] Updating active status for test.fa [TRACE][13:45] Updating active status for [m] Multiple alignment [TRACE][13:45] Processing close window request for 'test Multiple alignment' [TRACE][13:45] Closing active window [TRACE][13:45] Updating active status for test.fa [TRACE][13:45] Updating active status for [m] Multiple alignment [DETAILS][13:45] Registering new task: Reload documents and restore view state task [TRACE][13:45] promoting task {Reload documents and restore view state task} to 'Prepared' [TRACE][13:45] promoting task {Reload documents task} to 'Prepared' [TRACE][13:45] promoting task {Reload 'test.fa' task} to 'Prepared' [TRACE][13:45] promoting task {Unload document task: E:/Desktop/test.fa} to 'Prepared' [TRACE][13:45] promoting task {Reload documents and restore view state task} to 'Running' [TRACE][13:45] promoting task {Reload documents task} to 'Running' [TRACE][13:45] promoting task {Reload 'test.fa' task} to 'Running' [TRACE][13:45] promoting task {Unload document task: E:/Desktop/test.fa} to 'Running' [TRACE][13:45] promoting task {Unload document task: E:/Desktop/test.fa} to 'Finished' [DETAILS][13:45] Starting load document from E:/Desktop/test.fa, document format FASTA [DETAILS][13:45] resource 'Project Document::E:/Desktop/test.fa' is used by 'Load 'test.fa'' [TRACE][13:45] promoting task {Load 'test.fa'} to 'Prepared' [TRACE][13:45] load document:Memory resource 0 [TRACE][13:45] promoting task {Read document: 'test.fa'} to 'Prepared' [TRACE][13:45] promoting task {Load 'test.fa'} to 'Running' [TRACE][13:45] acquiring resource: 'Threads':1, state: 1/1000 [TRACE][13:45] promoting task {Read document: 'test.fa'} to 'Running' [TRACE][13:45] Objects renaming failed! Objects in doc: 2, names: 1 [TRACE][13:45] releasing resource: 'Threads':1, state: 0/1000 [TRACE][13:45] promoting task {Read document: 'test.fa'} to 'Finished' [DETAILS][13:45] resource 'Project Document::E:/Desktop/test.fa' is released by 'Load 'test.fa'' [TRACE][13:45] promoting task {Load 'test.fa'} to 'Finished' [TRACE][13:45] promoting task {Reload 'test.fa' task} to 'Finished' [TRACE][13:45] promoting task {Reload documents task} to 'Finished' [TRACE][13:45] promoting task {Restore state task} to 'Prepared' [TRACE][13:45] promoting task {Open 'test Multiple alignment'} to 'Prepared' [TRACE][13:45] promoting task {Restore state task} to 'Running' [TRACE][13:45] promoting task {Open 'test Multiple alignment'} to 'Running' [TRACE][13:45] Adding window: 'test Multiple alignment' [TRACE][13:45] Switching active MDI window from '' to 'test Multiple alignment' [TRACE][13:45] Updating active status for test.fa [TRACE][13:45] Updating active status for [m] Multiple alignment [TRACE][13:45] Project view now listens object events in 'test Multiple alignment' view [TRACE][13:45] promoting task {Open 'test Multiple alignment'} to 'Finished' [TRACE][13:45] promoting task {Restore state task} to 'Finished' [TRACE][13:45] promoting task {Reload documents and restore view state task} to 'Finished' [TRACE][13:45] Unregistering task: Reload documents and restore view state task [TRACE][13:45] Deleting task: Unload document task: E:/Desktop/test.fa [TRACE][13:45] Deleting task: Read document: 'test.fa' [TRACE][13:45] Deleting task: Load 'test.fa' [TRACE][13:45] Deleting task: Reload 'test.fa' task [TRACE][13:45] Deleting task: Reload documents task [TRACE][13:45] Deleting task: Open 'test Multiple alignment' [TRACE][13:45] Deleting task: Restore state task [TRACE][13:45] Deleting task: Reload documents and restore view state task [TRACE][13:45] Log view update time 266 millis [TRACE][13:45] Window deactivation, no MDI context switch, window: 'test Multiple alignment' [TRACE][13:45] Updating active status for test.fa [TRACE][13:45] Updating active status for [m] Multiple alignment [TRACE][13:46] Window activation, no MDI context switch, window: 'test Multiple alignment' [TRACE][13:46] Updating active status for test.fa [TRACE][13:46] Updating active status for [m] Multiple alignment [TRACE][13:46] Project view now listens object events in 'test Multiple alignment' view [DETAILS][13:46] Registering new task: Run ClustalW alignment task [TRACE][13:46] promoting task {Run ClustalW alignment task} to 'Prepared' [TRACE][13:46] load document:Memory resource 0 [TRACE][13:46] promoting task {Read document: 'test.fa'} to 'Prepared' [TRACE][13:46] promoting task {Run ClustalW alignment task} to 'Running' [TRACE][13:46] acquiring resource: 'Threads':1, state: 1/1000 [TRACE][13:46] promoting task {Read document: 'test.fa'} to 'Running' [TRACE][13:46] releasing resource: 'Threads':1, state: 0/1000 [TRACE][13:46] promoting task {Read document: 'test.fa'} to 'Finished' [TRACE][13:46] promoting task {Run ClustalW alignment task} to 'Prepared' [TRACE][13:46] promoting task {Export alignment to 'tmp.aln'} to 'Prepared' [TRACE][13:46] promoting task {Run ClustalW alignment task} to 'Running' [TRACE][13:46] acquiring resource: 'Threads':1, state: 1/1000 [TRACE][13:46] promoting task {Export alignment to 'tmp.aln'} to 'Running' [TRACE][13:46] releasing resource: 'Threads':1, state: 0/1000 [TRACE][13:46] promoting task {Export alignment to 'tmp.aln'} to 'Finished' [TRACE][13:46] Creating run task for: ClustalW [TRACE][13:46] Program executable: C:\Program Files (x86)\Unipro UGENE\tools\clustalw-2.1\clustalw2.exe [TRACE][13:46] Program arguments: -ALIGN -INFILE=C:/Users/STPHAN~1/AppData/Local/Temp/ClustalW_102_13.09.2011_13.46.25.390_4668/tmp.aln -OUTORDER=INPUT -OUTFILE=C:/Users/STPHAN~1/AppData/Local/Temp/ClustalW_102_13.09.2011_13.46.25.390_4668/tmp.aln.out.aln [TRACE][13:46] promoting task {ClustalW run task} to 'Prepared' [TRACE][13:46] acquiring resource: 'Threads':1, state: 1/1000 [TRACE][13:46] promoting task {ClustalW run task} to 'Running' [TRACE][13:46] [TRACE][13:46] [TRACE][13:46] [TRACE][13:46] CLUSTAL 2.1 Multiple Sequence Alignments [TRACE][13:46] [TRACE][13:46] [TRACE][13:46] Sequence format is CLUSTAL [TRACE][13:46] Sequence 1: 1 3 bp [TRACE][13:46] Sequence 2: 2 3 bp [TRACE][13:46] Start of Pairwise alignments [TRACE][13:46] Aligning... [TRACE][13:46] [TRACE][13:46] Sequences (1:2) Aligned. Score: 66 [TRACE][13:46] Guide tree file created: [C:/Users/STPHAN~1/AppData/Local/Temp/ClustalW_102_13.09.2011_13.46.25.390_4668/tmp.dnd] [TRACE][13:46] [TRACE][13:46] There are 1 groups [TRACE][13:46] Start of Multiple Alignment [TRACE][13:46] [TRACE][13:46] Aligning... [TRACE][13:46] Group 1: Sequences: 2 Score:38 [TRACE][13:46] Alignment Score 4 [TRACE][13:46] [TRACE][13:46] CLUSTAL-Alignment file created [C:/Users/STPHAN~1/AppData/Local/Temp/ClustalW_102_13.09.2011_13.46.25.390_4668/tmp.aln.out.aln] [TRACE][13:46] [TRACE][13:46] releasing resource: 'Threads':1, state: 0/1000 [TRACE][13:46] promoting task {ClustalW run task} to 'Finished' [TRACE][13:46] load document:Memory resource 0 [TRACE][13:46] promoting task {Read document: 'tmp.aln.out.aln'} to 'Prepared' [TRACE][13:46] acquiring resource: 'Threads':1, state: 1/1000 [TRACE][13:46] promoting task {Read document: 'tmp.aln.out.aln'} to 'Running' [TRACE][13:46] releasing resource: 'Threads':1, state: 0/1000 [TRACE][13:46] promoting task {Read document: 'tmp.aln.out.aln'} to 'Finished' [TRACE][13:46] promoting task {Run ClustalW alignment task} to 'Finished' [TRACE][13:46] promoting task {Save document} to 'Prepared' [TRACE][13:46] acquiring resource: 'Threads':1, state: 1/1000 [TRACE][13:46] promoting task {Save document} to 'Running' [INFO][13:46] Saving document E:/Desktop/test.fa [TRACE][13:46] releasing resource: 'Threads':1, state: 0/1000 [TRACE][13:46] promoting task {Save document} to 'Finished' [TRACE][13:46] promoting task {Load document: 'test.fa'} to 'Prepared' [DETAILS][13:46] Starting load document from E:/Desktop/test.fa, document format FASTA [DETAILS][13:46] resource 'Project Document::E:/Desktop/test.fa' is used by 'Load 'test.fa'' [TRACE][13:46] promoting task {Load 'test.fa'} to 'Prepared' [TRACE][13:46] load document:Memory resource 0 [TRACE][13:46] promoting task {Read document: 'test.fa'} to 'Prepared' [TRACE][13:46] promoting task {Load document: 'test.fa'} to 'Running' [TRACE][13:46] promoting task {Load 'test.fa'} to 'Running' [TRACE][13:46] acquiring resource: 'Threads':1, state: 1/1000 [TRACE][13:46] promoting task {Read document: 'test.fa'} to 'Running' [TRACE][13:46] Objects renaming failed! Objects in doc: 2, names: 1 [TRACE][13:46] releasing resource: 'Threads':1, state: 0/1000 [TRACE][13:46] promoting task {Read document: 'test.fa'} to 'Finished' [DETAILS][13:46] resource 'Project Document::E:/Desktop/test.fa' is released by 'Load 'test.fa'' [TRACE][13:46] promoting task {Load 'test.fa'} to 'Finished' [TRACE][13:46] promoting task {Open view} to 'Prepared' [TRACE][13:46] promoting task {Open view} to 'Running' [TRACE][13:46] promoting task {Open view} to 'Finished' [TRACE][13:46] promoting task {Load document: 'test.fa'} to 'Finished' [TRACE][13:46] promoting task {Run ClustalW alignment task} to 'Finished' [TRACE][13:46] Unregistering task: Run ClustalW alignment task [TRACE][13:46] Deleting task: Read document: 'test.fa' [TRACE][13:46] Deleting task: Export alignment to 'tmp.aln' [TRACE][13:46] Deleting task: ClustalW run task [TRACE][13:46] Deleting task: Read document: 'tmp.aln.out.aln' [TRACE][13:46] Deleting task: Run ClustalW alignment task [TRACE][13:46] Deleting task: Save document [TRACE][13:46] Deleting task: Read document: 'test.fa' [TRACE][13:46] Deleting task: Load 'test.fa' [TRACE][13:46] Deleting task: Open view [TRACE][13:46] Deleting task: Load document: 'test.fa' [TRACE][13:46] Deleting task: Run ClustalW alignment task [TRACE][13:46] Window deactivation, no MDI context switch, window: 'test Multiple alignment' [TRACE][13:46] Updating active status for test.fa [TRACE][13:46] Updating active status for [m] Multiple alignment [TRACE][13:46] Window activation, no MDI context switch, window: 'test Multiple alignment' [TRACE][13:46] Updating active status for test.fa [TRACE][13:46] Updating active status for [m] Multiple alignment [TRACE][13:46] Project view now listens object events in 'test Multiple alignment' view [TRACE][13:46] Window deactivation, no MDI context switch, window: 'test Multiple alignment' [TRACE][13:46] Updating active status for test.fa [TRACE][13:46] Updating active status for [m] Multiple alignment [TRACE][13:46] Processing close window request for 'test Multiple alignment' [TRACE][13:46] Closing active window [TRACE][13:46] Updating active status for test.fa [TRACE][13:46] Updating active status for [m] Multiple alignment [DETAILS][13:46] Registering new task: Reload documents and restore view state task [TRACE][13:46] promoting task {Reload documents and restore view state task} to 'Prepared' [TRACE][13:46] promoting task {Reload documents task} to 'Prepared' [TRACE][13:46] promoting task {Reload 'test.fa' task} to 'Prepared' [TRACE][13:46] promoting task {Unload document task: E:/Desktop/test.fa} to 'Prepared' [TRACE][13:46] promoting task {Reload documents and restore view state task} to 'Running' [TRACE][13:46] promoting task {Reload documents task} to 'Running' [TRACE][13:46] promoting task {Reload 'test.fa' task} to 'Running' [TRACE][13:46] promoting task {Unload document task: E:/Desktop/test.fa} to 'Running' [TRACE][13:46] promoting task {Unload document task: E:/Desktop/test.fa} to 'Finished' [DETAILS][13:46] Starting load document from E:/Desktop/test.fa, document format FASTA [DETAILS][13:46] resource 'Project Document::E:/Desktop/test.fa' is used by 'Load 'test.fa'' [TRACE][13:46] promoting task {Load 'test.fa'} to 'Prepared' [TRACE][13:46] load document:Memory resource 0 [TRACE][13:46] promoting task {Read document: 'test.fa'} to 'Prepared' [TRACE][13:46] promoting task {Load 'test.fa'} to 'Running' [TRACE][13:46] acquiring resource: 'Threads':1, state: 1/1000 [TRACE][13:46] promoting task {Read document: 'test.fa'} to 'Running' [TRACE][13:46] Objects renaming failed! Objects in doc: 2, names: 1 [TRACE][13:46] releasing resource: 'Threads':1, state: 0/1000 [TRACE][13:46] promoting task {Read document: 'test.fa'} to 'Finished' [DETAILS][13:46] resource 'Project Document::E:/Desktop/test.fa' is released by 'Load 'test.fa'' [TRACE][13:46] promoting task {Load 'test.fa'} to 'Finished' [TRACE][13:46] promoting task {Reload 'test.fa' task} to 'Finished' [TRACE][13:46] promoting task {Reload documents task} to 'Finished' [TRACE][13:46] promoting task {Restore state task} to 'Prepared' [TRACE][13:46] promoting task {Open 'test Multiple alignment'} to 'Prepared' [TRACE][13:46] promoting task {Restore state task} to 'Running' [TRACE][13:46] promoting task {Open 'test Multiple alignment'} to 'Running' [TRACE][13:46] Adding window: 'test Multiple alignment' [TRACE][13:46] Switching active MDI window from '' to 'test Multiple alignment' [TRACE][13:46] Updating active status for test.fa [TRACE][13:46] Updating active status for [m] Multiple alignment [TRACE][13:46] Project view now listens object events in 'test Multiple alignment' view [TRACE][13:46] promoting task {Open 'test Multiple alignment'} to 'Finished' [TRACE][13:46] promoting task {Restore state task} to 'Finished' [TRACE][13:46] promoting task {Reload documents and restore view state task} to 'Finished' [TRACE][13:46] Unregistering task: Reload documents and restore view state task [TRACE][13:46] Deleting task: Unload document task: E:/Desktop/test.fa [TRACE][13:46] Deleting task: Read document: 'test.fa' [TRACE][13:46] Deleting task: Load 'test.fa' [TRACE][13:46] Deleting task: Reload 'test.fa' task [TRACE][13:46] Deleting task: Reload documents task [TRACE][13:46] Deleting task: Open 'test Multiple alignment' [TRACE][13:46] Deleting task: Restore state task [TRACE][13:46] Deleting task: Reload documents and restore view state task [TRACE][13:46] Log view update time 311 millis [TRACE][13:47] Window deactivation, no MDI context switch, window: 'test Multiple alignment' [TRACE][13:47] Updating active status for test.fa [TRACE][13:47] Updating active status for [m] Multiple alignment [TRACE][13:48] Window activation, no MDI context switch, window: 'test Multiple alignment' [TRACE][13:48] Updating active status for test.fa [TRACE][13:48] Updating active status for [m] Multiple alignment [TRACE][13:48] Project view now listens object events in 'test Multiple alignment' view