#@UGENE_WORKFLOW
#



workflow "Search sequences with HMM3"{

    hmm3-search {
        type:hmm3-search;
        name:"HMM3 Search";
    }
    hmm3-read-profile {
        type:hmm3-read-profile;
        name:"Read HMM3 Profile";
        url-in:"";
    }
    read-sequence-1 {
        type:read-sequence;
        name:"Read Sequence";
        url-in {
            dataset:"Dataset 1";
        }
    }
    write-sequence {
        type:write-sequence;
        name:"Write Sequence";
        document-format:genbank;
        url-out:hmm3_results.gb;
    }

    .actor-bindings {
        hmm3-read-profile.out-hmm3->hmm3-search.in-hmm3
        hmm3-search.out-annotations->write-sequence.in-sequence
        read-sequence-1.out-sequence->hmm3-search.in-sequence
    }

    hmm3-read-profile.hmm3-profile->hmm3-search.in-hmm3.hmm3-profile
    read-sequence-1.sequence->hmm3-search.in-sequence.sequence
    hmm3-search.annotations->write-sequence.in-sequence.annotations
    read-sequence-1.annotations->write-sequence.in-sequence.annotations
    read-sequence-1.sequence->write-sequence.in-sequence.sequence

    .meta {
        visual {
            hmm3-read-profile {
                pos:"-720 -375";
                style:ext;
                bg-color-ext:"0 128 128 64";
                out-hmm3.angle:360;
            }
            hmm3-search {
                pos:"-510 -300";
                style:ext;
                bg-color-ext:"0 128 128 64";
                in-hmm3.angle:150;
                in-sequence.angle:210;
                out-annotations.angle:360;
            }
            read-sequence-1 {
                pos:"-720 -195";
                style:ext;
                bg-color-ext:"0 128 128 64";
                out-sequence.angle:360;
            }
            write-sequence {
                pos:"-180 -300";
                style:ext;
                bg-color-ext:"0 128 128 64";
                in-sequence.angle:180;
            }
            hmm3-read-profile.out-hmm3->hmm3-search.in-hmm3 {
                text-pos:"-35 -24";
            }
            hmm3-search.out-annotations->write-sequence.in-sequence {
                text-pos:"-45 -37";
            }
            read-sequence-1.out-sequence->hmm3-search.in-sequence {
                text-pos:"-27.5 -24";
            }
        }
    }
}