#@UGENE_WORKFLOW
workflow "New schema"{
read-sequence {
type:read-sequence;
name:"Read Sequence";
}
repeats-search {
type:repeats-search;
name:"Find Repeats";
min-length:50;
}
write-sequence {
type:write-sequence;
name:"Write Sequence";
document-format:genbank;
}
.actor-bindings {
repeats-search.out-annotations->write-sequence.in-sequence
read-sequence.out-sequence->repeats-search.in-sequence
}
read-sequence.sequence->repeats-search.in-sequence.sequence
read-sequence.annotations->write-sequence.in-sequence.annotations
repeats-search.annotations->write-sequence.in-sequence.annotations
read-sequence.sequence->write-sequence.in-sequence.sequence
.meta {
visual {
read-sequence {
description:" Read Sequence
Reads sequence(s) from unset.
";
tooltip:"Reads sequences and annotations if any from local or remote files.";
pos:"-703 -645";
style:ext;
bg-color-ext:"0 128 128 64";
out-sequence.angle:360;
}
repeats-search {
description:" Find Repeats
For each sequence from Read Sequence, find direct repeats.
Detect 100% identical repeats not shorter than 50 bps.
Output the list of found regions annotated as repeat_unit.
";
tooltip:"Finds repeats in each supplied sequence, stores found regions as annotations.";
pos:"-513 -646";
style:ext;
bg-color-ext:"0 128 128 64";
in-sequence.angle:180;
out-annotations.angle:360;
}
write-sequence {
description:" Write Sequence
Save all sequences from Read Sequence to unset.
";
tooltip:"Writes all supplied sequences to file(s) in selected format.";
pos:"-199 -645";
style:ext;
bg-color-ext:"0 128 128 64";
in-sequence.angle:180;
}
read-sequence.out-sequence->repeats-search.in-sequence {
text-pos:"-27.5 -24";
}
repeats-search.out-annotations->write-sequence.in-sequence {
text-pos:"-45 -37";
}
}
}
}