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General Category >> Bugs and Issues >> Problem with SPAdes assembly https://forum.ugene.net/forum/YaBB.pl?num=1698929526 Message started by Jesus on Nov 2nd, 2023 at 7:52pm |
Title: Problem with SPAdes assembly Post by Jesus on Nov 2nd, 2023 at 7:52pm
Hi, I am trying to assemble two .fq files obtained with illumina paired ends. This files already have been used to assemble contigs using Shovill of Galaxy, however, when I try to run an assembly with UGene, the pipe stops with the message "Subtask {GenomeAssemblyTask} is failed: Subtask {SPAdes tool} is failed: SPAdes tool exited with code 245". Can you give any advice, please?
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Title: Re: Problem with SPAdes assembly Post by kimon58 on Nov 30th, 2024 at 12:43am
Ensure that your .fq files are clean and do not have any errors in the data (e.g., quality control issues). You could run a QC step using tools like FastQC to check the quality of your reads before attempting assembly.
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