1- If I export several features as alignments, the sequences I get are the reverse complementaries instead of the originals.

2- Also, I've seen that sometimes you can export the translation of the selected sequences, but that option appears quite seldom. I'm not sure if I'm doing something wrong or if this is a bug. 

Thanks

Agu wrote on Nov 17^th, 2010 at 8:18pm:


Fixed.
Still wonder why we didn't have tests for these feature before ...

Quote:

Now I figure it out, so I can give a better explanation. My goal was, working with several genbank files in the same display, to select the same feature in the different sequences and to make an alignment. It would be nice to be able to do that for both, DNA and protein.
If I select the different features, I only have the option for a DNA alignment:



Now, if I have the Details view activated and select some sequence for both, I get the option for translated alignment:



The "random" behavior came when I had some sequence selected in the detailed view. Even hiding  this views and selecting features, I get the option for translation:



Then, the problem is that in this last case, Ugene will use the selected features shown in the screen if you choose the DNA alignment, while it will use the "other" selected sequences (hidden or not) when selecting the translation option. This could be solved with an automatic selection in the detail view. I mean, automatically selecting the corresponding sequence in the detail view when selecting a feature in the zoom view. Also, for some situations It would be much faster than having to select a feature and then going to "Select/Sequence around selected annotation".
I can't think of a negative side for that behavior (actually, I believe it would be a nice feature).
Just to make it more clear, after selecting a feature with one click it should look like this:




Hope this helps...

This could be solved with an automatic selection in the detail view. I mean, automatically selecting the corresponding sequence in the detail view when selecting a feature in the zoom view

Fixed. Now with every annotation selected a sequence region around the annotation is also selected, so you have 2 sets of options: work with annotation selection or with sequence selection independently



My goal was, working with several genbank files in the same display, to select the same feature in the different sequences and to make an alignment. It would be nice to be able to do that for both, DNA and protein.

The feature is implemented too. Thanks for your feedback