UGENE Forum - Any workarounds for bug: The external tools validation task fails with first failed scripting?


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UGENE Forum › General Category › Bugs and Issues › Any workarounds for bug: The external tools validation task fails with first failed scripting?

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Any workarounds for bug: The external tools validation task fails with first failed scripting? (Read 5953 times)

Jul 23^rd, 2013 at 9:45pm

hoytpr Offline
YaBB Newbies

Posts: 7

Is there a workaround to get the Cistrome folder and scripts working? I'm using 1.12.1. If there is a patch, please explain how to install it. Thanks. Wish I could help with bugs, but I'm not good at programming/scripting.
Great software you guys! Thank-you and I am working on getting a donation together.

(WinXP-Pro-x64, AMD Phenom II X6, 16Gb RAM, R version 2.11.1)

-p

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Reply #1 - Jul 23^rd, 2013 at 10:43pm

Olga Golosova Offline
YaBB Administrator

Posts: 338

Hi!

Yeah, the pipeline documentation is not ready yet. There are also going to be more tweaks on the Cistrome pipeline. It would be great if you will also participate in the pipeline testing

I recommend you to work on the latest snapshot instead of 1.12.1, it is even more updated: http://ugene.unipro.ru/snapshot.html

Some info about how to configure Cistrome and the data, required for it, can be found here: http://ugene.unipro.ru/ugene_niaid.html
However the docs here are a little obsolete. For example, there is no more need in installing the python tools (django and others) - they should be inside the "embedded python" external tool.

Regards,
Olga

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Reply #2 - Jul 23^rd, 2013 at 11:12pm

hoytpr Offline
YaBB Newbies

Posts: 7

Thanks, I'll try the snapshot and report back. I would be very happy to help in your pipeline testing. I could probably even help in a Linux environment (we use CentOS)... just not Macs-OSX.

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