Welcome, Guest. Please Login or Register
UGENE Bulletin Board
  Welcome to our forum.
Page Index Toggle Pages: 1
where is multithreading for bowtie? (Read 3396 times)
Apr 27th, 2014 at 9:52pm

vixen sjlin   Offline
YaBB Newbies

Posts: 8
Hi there:

I am using 1.13.2 full 32 or 64.  Previously when align short reads there's an option for multithreading in bowtie, but I can't find it now.  Thanks for fixing!

Best regards,
IP Logged
Reply #1 - May 9th, 2014 at 3:32pm

Yuriy Vaskin   Offline
Global Moderator

Gender: male
Posts: 138

What operating system do you use? I just checked on Mac OS X and there is the option. Make sure you selected bowtie as the short read aligned. There is the 'Threads' option in the left bottom corner of the Align sequencing reads dialog. By default it uses 4 threads for a 4-core processor, 2 thread for a 2-core, etc.
IP Logged
Page Index Toggle Pages: 1