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where is multithreading for bowtie? (Read 3347 times)
Apr 27th, 2014 at 9:52pm

vixen sjlin   Offline
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Hi there:

I am using 1.13.2 full 32 or 64.  Previously when align short reads there's an option for multithreading in bowtie, but I can't find it now.  Thanks for fixing!

Best regards,
 
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Reply #1 - May 9th, 2014 at 3:32pm

Yuriy Vaskin   Offline
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Hi!

What operating system do you use? I just checked on Mac OS X and there is the option. Make sure you selected bowtie as the short read aligned. There is the 'Threads' option in the left bottom corner of the Align sequencing reads dialog. By default it uses 4 threads for a 4-core processor, 2 thread for a 2-core, etc.
 
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