The latest UGENE 1.12 version is a major release that provides dozens of new features (major and minor), bug fixes and a set of usability and other improvements.
The major changes are:
* The new entity 'Datasets' in the Workflow Designer which replaces URL parameters
*The MSA editor has been upgraded with pairwise alignment algorithms and the sequence highlighting
*The Assembly Browser allows exporting consensus variations in VCF4 and Simple SNP formats
* Integration with BioMart: extensions for WEB-browsers (Mozilla Firefox and Google Chrome)
You can download the version here:
http://ugene.unipro.ru/download.html
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