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https://forum.ugene.net/forum/YaBB.pl General Category >> Help and How-to >> Workflow for to call LOH https://forum.ugene.net/forum/YaBB.pl?num=1610579440 Message started by andressa a on Jan 14^th, 2021 at 6:10am

Title: Workflow for to call LOH
Post by andressa a on Jan 14^th, 2021 at 6:10am

Hi is there any workflow to call variants and loss of heterozygosity (LOH) in paired tumor/normal samples in UGENE? Like what VarScan does?

thanks

Title: Re: Workflow for to call LOH
Post by Dmitrii Sukhomlinov on Jan 14^th, 2021 at 12:39pm

Hello,
There are two workflows in Workflow Designer for variant calling (Click "Run or Create Workflow" -> "Samples" tab on the left part -> text "call" to the "Filter" field), but there are no workflows for LOH, unfortunately.