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https://forum.ugene.net/forum/YaBB.pl General Category >> Bugs and Issues >> where is multithreading for bowtie? https://forum.ugene.net/forum/YaBB.pl?num=1398610320 Message started by vixen sjlin on Apr 27^th, 2014 at 9:52pm

Title: where is multithreading for bowtie?
Post by vixen sjlin on Apr 27^th, 2014 at 9:52pm

Hi there:

I am using 1.13.2 full 32 or 64. Previously when align short reads there's an option for multithreading in bowtie, but I can't find it now. Thanks for fixing!

Best regards,

Title: Re: where is multithreading for bowtie?
Post by Yuriy Vaskin on May 9^th, 2014 at 3:32pm

Hi!

What operating system do you use? I just checked on Mac OS X and there is the option. Make sure you selected bowtie as the short read aligned. There is the 'Threads' option in the left bottom corner of the Align sequencing reads dialog. By default it uses 4 threads for a 4-core processor, 2 thread for a 2-core, etc.