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General Category >> Bugs and Issues >> Annotations in gb file are not labelled correctly
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Message started by Peacemaker on Jun 3rd, 2013 at 4:46pm

Title: Annotations in gb file are not labelled correctly
Post by Peacemaker on Jun 3rd, 2013 at 4:46pm
Hello,
I found that ugene does not label the annotations in gb files correctly. When you download a plasmid sequence from Novagen (e.g. the pET28a sequence, http://www.merckmillipore.de/chemdat/en_CA/Merck-US-Site/USD/ViewProductDocuments-File?ProductSKU=EMD_BIO-69864&DocumentType=VSEQ&DocumentId=/emd/biosciences/vectorsequences/en-US/69864.zip&DocumentSource=GDS), the annotations are labeled with the annotation type (e.g. CDS, rep origin) instead of their name (e.g. lac I, f1 origin). Even though the sequence files provided by novagen might not fully comply with the genebank standard, it would be good if ugene would display the labels correctly. Other programs such as VectorNTI display that correctly.
Many thanks in advance for fixing.

Title: Re: Annotations in gb file are not labelled correctly
Post by randolf on Jun 17th, 2013 at 9:15pm
Hi Peacemaker,
I'm not from the ugene team, but I don't think that ugene is doing anything wrong here.
When you click on a CDS feature in the annotaion view, you can see that the name of the feature is stored in the qualifier "label". So on the right of the screen you go to  annotations highlighting, click on the annotation type "CDS" and under "show value of qualifier" enter "label". This should do the job.


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