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https://forum.ugene.net/forum/YaBB.pl General Category >> Bugs and Issues >> Incorrect import of a Nexus file https://forum.ugene.net/forum/YaBB.pl?num=1362107195 Message started by Peter on Mar 1^st, 2013 at 10:06am

Title: Incorrect import of a Nexus file
Post by Peter on Mar 1^st, 2013 at 10:06am

Hi.
I tried to import an aligned Nexus file, consisting of 50 sequences, each comprising about 13,000 nucleotides. The import filter correctly identified the file format as Nexus. However, when it displayed in UGene, all the nucleotides (657,078) are displayed as on a single line.
Note: I tried to attach the nexus file, but it was too large (667 KB)

thanks

Title: Re: Incorrect import of a Nexus file
Post by Yuriy Vaskin on Mar 1^st, 2013 at 2:36pm

Peter,

thank you for letting us know about the bug.

We've just fixed on serious problem with names in Nexus file. UGENE worked incorrectly with them if names contained non-letter, non-digit or non-space characters like ".", "?", "(", ")", etc.

This fix will be available in the next version of UGENE which is coming out in a week. But we would like to test your file to make sure it works fine. Could you please send it to our email (ugene [at] unirpo [dot] ru)?