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General Category >> Help and How-to >> How to create a GenBank file?
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Message started by Joseph Blackson on Jan 12th, 2013 at 7:26am

Title: How to create a GenBank file?
Post by Joseph Blackson on Jan 12th, 2013 at 7:26am
In UGENE, can you create a new sequence file and a new annotation table and merge them into a single GenBank file? (ie instead of having two separate linked files can you create a new GenBank file from scratch)

I want to create genbank files de novo in UGENE but the best I've been able to do so far is File->Create Document from text... and then create a separate gb file which stores all the annotations.

Thanks for any help!

Joe

Title: Re: How to create a GenBank file?
Post by Konstantin Okonechnikov on Jan 14th, 2013 at 7:44pm
Hi Joe,

To merge sequence and annotations into single document select the sequence in ProjectView and call context menu item Export Sequences

After that set output format to Genbank and make sure to check box Export with annotations

Here is the detailed description of Export sequence feature:
http://ugene.unipro.ru/documentation/manual/basic_functions/export_objects/seq_as_seq.html

Hope that helps :)

Title: Re: How to create a GenBank file?
Post by Joseph Blackson on Jan 17th, 2013 at 5:34am
Perfect!!  Thanks!
Joe

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