UGENE Forum
https://forum.ugene.net/forum/YaBB.pl
General Category >> Help and How-to >> Trees and format conversion in workflow designer
https://forum.ugene.net/forum/YaBB.pl?num=1355330015

Message started by Alchemist Raka on Dec 12th, 2012 at 11:33pm

Title: Trees and format conversion in workflow designer
Post by Alchemist Raka on Dec 12th, 2012 at 11:33pm
Greets,

1> Is there anyway to add tree calculation and construction to the workflow designer instead of having to go all the way back to the main menu and reopen an alignment file and generate a tree?

2> Is there any way to convert the alignment files to say a PHYLIP format both from the main menu and from within the workflow?

Kind regards,
AR

Title: Re: Trees and format conversion in workflow designer
Post by Agu on Dec 13th, 2012 at 12:41am
1> No, that would be a new feature. Maybe with a script but I have no idea how to do that.

2> Yes, from both, but I don't think that the PLYLIP format is included (not sure, maybe with different name). In the objects view (left panel of the project), right click and "export document". There you can choose several formats. In the workflow designer, the "write alignment" element has several formats to choose from.

Title: Re: Trees and format conversion in workflow designer
Post by Alchemist Raka on Dec 13th, 2012 at 1:52am
Thanks,

No the phylip format is not included in the write alignment element.

Regards,
AR

UGENE Forum » Powered by YaBB 2.5 AE!
YaBB Forum Software © 2000-2010. All Rights Reserved.