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https://forum.ugene.net/forum/YaBB.pl General Category >> Help and How-to >> Trees and format conversion in workflow designer https://forum.ugene.net/forum/YaBB.pl?num=1355330015 Message started by Alchemist Raka on Dec 12^th, 2012 at 11:33pm

Title: Trees and format conversion in workflow designer
Post by Alchemist Raka on Dec 12^th, 2012 at 11:33pm

Greets,

1> Is there anyway to add tree calculation and construction to the workflow designer instead of having to go all the way back to the main menu and reopen an alignment file and generate a tree?

2> Is there any way to convert the alignment files to say a PHYLIP format both from the main menu and from within the workflow?

Kind regards,
AR

Title: Re: Trees and format conversion in workflow designer
Post by Agu on Dec 13^th, 2012 at 12:41am

1> No, that would be a new feature. Maybe with a script but I have no idea how to do that.

2> Yes, from both, but I don't think that the PLYLIP format is included (not sure, maybe with different name). In the objects view (left panel of the project), right click and "export document". There you can choose several formats. In the workflow designer, the "write alignment" element has several formats to choose from.

Title: Re: Trees and format conversion in workflow designer
Post by Alchemist Raka on Dec 13^th, 2012 at 1:52am

Thanks,

No the phylip format is not included in the write alignment element.

Regards,
AR