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General Category >> Help and How-to >> Ugene Query Designer https://forum.ugene.net/forum/YaBB.pl?num=1295438742 Message started by Petr Golubev on Jan 19th, 2011 at 7:05pm |
Title: Ugene Query Designer Post by Petr Golubev on Jan 19th, 2011 at 7:05pm
Since version 1.9.0 a new sequence analyze tool "Query Designer" is available in UGENE. This tool allows you to find sequence regions containing specified set of features.
For instance, you can search a sequence for open reading frames surrounded by repeat units using supplied sample query file as follows (post below contains pictures): 1. Open a sequence in the Sequence view. 2. Activate the context menu and select 'Analyze -> Analyze with query schema'. Pic.1 3. In the 'File with query' field select '$UGENE/data/query_samples/RepeatsWithORF.uql'. Pic.2 4. Click 'Search'. 5. Obtained annotations are collected in groups so that every group contains an ORF surrounded by repeat pair units. Pic.3 Any feedback is welcome. |
Title: Re: Ugene Query Designer Post by Petr Golubev on Jan 19th, 2011 at 7:06pm
Documentation on creating and editing query file using GUI interface or text editor is available at:
http://ugene.unipro.ru/documentation/qd_manual/index.html ![]() ![]() ![]() |
Title: Re: Ugene Query Designer Post by Loren on Jan 8th, 2023 at 6:02am Petr Golubev wrote on Jan 19th, 2011 at 7:05pm:
Both explanations are very clear and helpful. I have successfully did all the steps by the help of this threat thanks a lot! :) |
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