UGENE Forum - Print Page

UGENE Forum
https://forum.ugene.net/forum/YaBB.pl General Category >> Help and How-to >> Problem: Find Restriction sites does not find all sites in circular DNA https://forum.ugene.net/forum/YaBB.pl?num=1277817162 Message started by Sebastian on Jun 29^th, 2010 at 8:12pm

Title: Problem: Find Restriction sites does not find all sites in circular DNA
Post by Sebastian on Jun 29^th, 2010 at 8:12pm

Hi,

the tool "Restriction sites..." does not find sites that overlaps the virtual gap in circular dna.

For example:

A Plasmid has 2000 bp and an XbaI site from 1996 to 1 - Ugene won't find it.

Is there any solution for that problem?

Title: Re: Problem: Find Restriction sites does not find all sites in circular DNA
Post by Konstantin Okonechnikov on Jun 30^th, 2010 at 12:21pm

Sebastian,
currently there is no possible way to find sites with virtual gaps.

We are planning to fix this issue in next release (1.7.1)

Thanks for your report!

Title: Re: Problem: Find Restriction sites does not find all sites in circular DNA
Post by Konstantin Okonechnikov on Jul 14^th, 2010 at 9:59pm

The 1.7.1 version is released. This issue has been solved.