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https://forum.ugene.net/forum/YaBB.pl General Category >> Video Tutorials >> UGENE video tutorials #24: SITECON: Searching for TFBS and making TFBS alignments profiles https://forum.ugene.net/forum/YaBB.pl?num=1277815258 Message started by Alexey Filippenko on Jun 29^th, 2010 at 7:40pm

Title: UGENE video tutorials #24: SITECON: Searching for TFBS and making TFBS alignments profiles
Post by Alexey Filippenko on Jun 29^th, 2010 at 7:40pm

UGENE SITECON plugin is a program package for searching for potential transcription factor binding sites. The tool is developed in Institute of Cytology and Genetics SB RAS.

The video shows how to use SITECON to search for TFBS in a DNA sequence and how to create SITECON profiles for future searches.

[media width=720]http://www.youtube.com/watch?v=243r5P_JhH4&fmt=18[/media]
http://www.youtube.com/watch?v=243r5P_JhH4

Title: Re: UGENE video tutorials #24: SITECON: Searching for TFBS and making TFBS alignments profiles
Post by Poh on May 9^th, 2011 at 5:54pm

Can I put or select more than one profiles to search in 1 go?

Title: Re: UGENE video tutorials #24: SITECON: Searching for TFBS and making TFBS alignments profiles
Post by Mikhail Fursov on May 17^th, 2011 at 8:25pm

Poh wrote on May 9^th, 2011 at 5:54pm:

Can I put or select more than one profiles to search in 1 go?

With workflow designer: yes. With sequence view dialog - no.
Please add issue to the tracker if solution in sequence view is also actual.

Title: Re: UGENE video tutorials #24: SITECON: Searching for TFBS and making TFBS alignments profiles
Post by Bren Bobb on Apr 2^nd, 2021 at 11:10am

The usefulness of this video and significance of it is very overwhelming.