UGENE Forum | |
https://forum.ugene.net/forum/YaBB.pl
General Category >> Feature Requests >> de-novo assembly https://forum.ugene.net/forum/YaBB.pl?num=1262861642 Message started by assembler on Jan 7th, 2010 at 5:54pm |
Title: de-novo assembly Post by assembler on Jan 7th, 2010 at 5:54pm
Do you have plans to add modules for de-novo genome assembly for 454 and/or Illumina sequencers? I am particularly interested in using it with 454 data. I don't think you have this functionality in the current version but sorry if I missed something.
Many thanks |
Title: Re: de-novo assembly Post by Mikhail Fursov on Jan 22nd, 2010 at 12:03am
Hi!
The feature looks interesting. Do you know if there is a good open-source software we can integrate to solve the problem? |
Title: Re: de-novo assembly Post by Jens on Feb 1st, 2010 at 11:32pm
AMOS might be what you are looking for
https://sourceforge.net/apps/mediawiki/amos/index.php?title=AMOS |
Title: Re: de-novo assembly Post by Mikhail Fursov on Feb 2nd, 2010 at 7:01pm Jens wrote on Feb 1st, 2010 at 11:32pm:
Thanks Jens, having an assembler in the package is a hot topic for the dev-team now so we will definitely review the AMOS as a good candidate. BTW have you ever heard about Bowtie project: http://bowtie-bio.sourceforge.net/index.shtml ? |
UGENE Forum » Powered by YaBB 2.5 AE! YaBB Forum Software © 2000-2010. All Rights Reserved. |